Difference between revisions of "TSS:Hg 106619.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=397 |entrez_id=55719 |gc_percent=0.61194 |gene_alias=C10orf6|FAM178A |gene_description=SMC5-SMC6 complex localization factor 2 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FAM178A= | ||
| + | |all_trans=ENST00000370271.7:0 uc001krr.2:0 AL833126:0 AL832343:0 BC015131:0 BC047715:0 ENST00000370269.3:2 uc001krs.4:2 BC030565:2 BC064526:2 AK292565:-4 BC020915:10 ENST00000609386.1:19 uc001krq.5:19 BC073832:19 AL832383:24 AB385255:133 BC160007:133 ENST00000238961.8:-387 NM_001136123:-387 NM_001243770:-387 NM_018121:-387 uc001krt.5:-387 AF460992:-387 AF460991:-387 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=0 | ||
|distance_to_tss=397 | |distance_to_tss=397 | ||
| + | |end=100912977 | ||
|entrez_id=55719 | |entrez_id=55719 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
|gene_alias=C10orf6|FAM178A | |gene_alias=C10orf6|FAM178A | ||
|gene_description=SMC5-SMC6 complex localization factor 2 | |gene_description=SMC5-SMC6 complex localization factor 2 | ||
| − | |gene_name=SLF2 | + | |gene_id=55719 |
| + | |gene_name=SMC5-SMC6 complex localization factor 2 | ||
| + | |gene_source=HGNC:17814 | ||
| + | |gene_symbol=SLF2 | ||
| + | |gene_synonyms=FLJ10512 FLJ25012 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17814 | ||
|nearest_ensembl=ENSG00000119906 | |nearest_ensembl=ENSG00000119906 | ||
|nearest_promoter_id=NM_001243770 | |nearest_promoter_id=NM_001243770 | ||
|nearest_refseq=NM_018121 | |nearest_refseq=NM_018121 | ||
|nearest_unigene=Hs.447458 | |nearest_unigene=Hs.447458 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=100912955 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000370271.7 uc001krr.2 AL833126 AL832343 BC015131 BC047715 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106619.1 | |tss_id=hg_106619.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B1AL16 Q05BG6 | ||
}} | }} | ||
Revision as of 22:26, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000370271.7 uc001krr.2 AL833126 AL832343 BC015131 BC047715 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000370271.7:0 uc001krr.2:0 AL833126:0 AL832343:0 BC015131:0 BC047715:0 ENST00000370269.3:2 uc001krs.4:2 BC030565:2 BC064526:2 AK292565:-4 BC020915:10 ENST00000609386.1:19 uc001krq.5:19 BC073832:19 AL832383:24 AB385255:133 BC160007:133 ENST00000238961.8:-387 NM_001136123:-387 NM_001243770:-387 NM_018121:-387 uc001krt.5:-387 AF460992:-387 AF460991:-387 |
TATA-Box annotation
| Distance to TSS: | 397 |
|---|---|
| Nearest PromoterID: | NM_001243770 |
| Entrez ID: | 55719 |
| Nearest Unigene: | Hs.447458 |
| Nearest Refseq: | NM_018121 |
| Nearest Ensembl: | ENSG00000119906 |
| Gene Name: | SMC5-SMC6 complex localization factor 2 |
| Gene Alias: | C10orf6 |
| Gene Description: | SMC5-SMC6 complex localization factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
