Difference between revisions of "TSS:Hg 106687.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=72 |entrez_id=9221 |gc_percent=0.626866 |gene_alias=NOPP130|NOPP140|NS5ATP13|P130 |gene_description=nucleolar and coiled-body ph...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NOPP140= | ||
| + | |NS5ATP13= | ||
| + | |P130= | ||
| + | |all_trans=ENST00000605788.5:-58 ENST00000405356.5:-58 NM_001284388:-58 NM_001284389:-58 NM_004741:-58 uc001kuo.4:-58 uc001kup.3:-58 Z34289:98 AK225101:127 AK314363:127 ENST00000464969.6:133 uc057vpb.1:133 AK056755:133 ENST00000488254.6:142 ENST00000603946.5:142 uc001kuq.4:142 uc057vpc.1:142 BC001883:142 BC006769:142 ENST00000461421.5:147 uc057vpd.1:147 DQ891862:148 DQ895051:148 AB383719:149 AY820769:149 ENST00000476468.5:151 uc057vpe.1:151 ENST00000370007.5:153 uc057vpf.1:153 D21262:153 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=-58 | ||
|distance_to_tss=72 | |distance_to_tss=72 | ||
| + | |end=102152262 | ||
|entrez_id=9221 | |entrez_id=9221 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=NOPP130|NOPP140|NS5ATP13|P130 | |gene_alias=NOPP130|NOPP140|NS5ATP13|P130 | ||
|gene_description=nucleolar and coiled-body phosphoprotein 1 | |gene_description=nucleolar and coiled-body phosphoprotein 1 | ||
| − | |gene_name=NOLC1 | + | |gene_id=9221 |
| + | |gene_name=nucleolar and coiled-body phosphoprotein 1 | ||
| + | |gene_source=HGNC:15608 | ||
| + | |gene_symbol=NOLC1 | ||
| + | |gene_synonyms=KIAA0035 NOPP130 NOPP140 P130 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15608 | ||
|nearest_ensembl=ENSG00000166197 | |nearest_ensembl=ENSG00000166197 | ||
|nearest_promoter_id=NM_001284389 | |nearest_promoter_id=NM_001284389 | ||
|nearest_refseq=NM_004741 | |nearest_refseq=NM_004741 | ||
|nearest_unigene=Hs.523238 | |nearest_unigene=Hs.523238 | ||
| + | |num_trans=30 | ||
| + | |species=human | ||
| + | |start=102152233 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000605788.5 ENST00000405356.5 NM_001284388 NM_001284389 NM_004741 uc001kuo.4 uc001kup.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106687.1 | |tss_id=hg_106687.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q14978 Q96J17 | ||
}} | }} | ||
Revision as of 22:29, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000605788.5 ENST00000405356.5 NM_001284388 NM_001284389 NM_004741 uc001kuo.4 uc001kup.3 |
|---|---|
| Distance: | -58 |
| Num_trans: | 30 |
| All_trans: | ENST00000605788.5:-58 ENST00000405356.5:-58 NM_001284388:-58 NM_001284389:-58 NM_004741:-58 uc001kuo.4:-58 uc001kup.3:-58 Z34289:98 AK225101:127 AK314363:127 ENST00000464969.6:133 uc057vpb.1:133 AK056755:133 ENST00000488254.6:142 ENST00000603946.5:142 uc001kuq.4:142 uc057vpc.1:142 BC001883:142 BC006769:142 ENST00000461421.5:147 uc057vpd.1:147 DQ891862:148 DQ895051:148 AB383719:149 AY820769:149 ENST00000476468.5:151 uc057vpe.1:151 ENST00000370007.5:153 uc057vpf.1:153 D21262:153 |
TATA-Box annotation
| Distance to TSS: | 72 |
|---|---|
| Nearest PromoterID: | NM_001284389 |
| Entrez ID: | 9221 |
| Nearest Unigene: | Hs.523238 |
| Nearest Refseq: | NM_004741 |
| Nearest Ensembl: | ENSG00000166197 |
| Gene Name: | nucleolar and coiled-body phosphoprotein 1 |
| Gene Alias: | NOPP130 |
| Gene Description: | nucleolar and coiled-body phosphoprotein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
