Difference between revisions of "TSS:Hg 106745.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=-309 |entrez_id=81603 |gc_percent=0.79602 |gene_alias=GERP|RNF27 |gene_description=tripartite motif containing 8 |gene_name=TRIM...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RNF27= | ||
| + | |all_trans=NM_030912:287 ENST00000302424.11:288 uc001kvz.3:288 BC021925:288 AL360160:401 AF281046:401 DQ895209:408 DQ892019:408 AF220034:410 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=287 | ||
|distance_to_tss=-309 | |distance_to_tss=-309 | ||
| + | |end=102644208 | ||
|entrez_id=81603 | |entrez_id=81603 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=GERP|RNF27 | |gene_alias=GERP|RNF27 | ||
|gene_description=tripartite motif containing 8 | |gene_description=tripartite motif containing 8 | ||
| − | |gene_name=TRIM8 | + | |gene_id=81603 |
| + | |gene_name=tripartite motif containing 8 | ||
| + | |gene_source=HGNC:15579 | ||
| + | |gene_symbol=TRIM8 | ||
| + | |gene_synonyms=GERP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15579 | ||
|nearest_ensembl=ENSG00000171206 | |nearest_ensembl=ENSG00000171206 | ||
|nearest_promoter_id=NM_001345950 | |nearest_promoter_id=NM_001345950 | ||
|nearest_refseq=NM_030912 | |nearest_refseq=NM_030912 | ||
|nearest_unigene=Hs.336810 | |nearest_unigene=Hs.336810 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=102644164 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_030912 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106745.1 | |tss_id=hg_106745.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9BZR9 | ||
}} | }} | ||
Revision as of 22:31, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_030912 |
|---|---|
| Distance: | 287 |
| Num_trans: | 9 |
| All_trans: | NM_030912:287 ENST00000302424.11:288 uc001kvz.3:288 BC021925:288 AL360160:401 AF281046:401 DQ895209:408 DQ892019:408 AF220034:410 |
TATA-Box annotation
| Distance to TSS: | -309 |
|---|---|
| Nearest PromoterID: | NM_001345950 |
| Entrez ID: | 81603 |
| Nearest Unigene: | Hs.336810 |
| Nearest Refseq: | NM_030912 |
| Nearest Ensembl: | ENSG00000171206 |
| Gene Name: | tripartite motif containing 8 |
| Gene Alias: | GERP |
| Gene Description: | tripartite motif containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
