Difference between revisions of "TSS:Hg 109454.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=149 |entrez_id=220965 |gc_percent=0.696517 |gene_alias=FAM13C1 |gene_description=family with sequence similarity 13 member C |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000470220.5:48 uc057tkj.1:48 ENST00000503444.1:-71 uc057tko.1:-71 ENST00000468840.6:-144 NM_001143773:-144 uc010qie.3:-144 AK299924:-144 ENST00000618427.4:155 ENST00000611933.4:155 NM_001166698:155 NM_198215:155 NM_001001971:155 uc031wid.2:155 uc031wif.2:155 BC064431:155 ENST00000622363.4:159 uc057tkb.1:159 AK316542:159 ENST00000621119.4:185 uc057tka.1:185 ENST00000618804.4:199 uc031wie.2:199 BC036453:199 ENST00000614220.4:202 uc057tjz.1:202 ENST00000619059.4:227 uc057tkl.1:227 AK289796:229 AK294805:240 ENST00000435852.6:241 uc031wig.2:241 ENST00000422313.6:289 uc001jkp.4:289 KJ895852:289 KJ900467:289 DQ894404:289 EU176262:289 CU687880:289 ENST00000512919.5:-422 uc057tkn.1:-422 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=48 | ||
|distance_to_tss=149 | |distance_to_tss=149 | ||
| + | |end=59362759 | ||
|entrez_id=220965 | |entrez_id=220965 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=FAM13C1 | |gene_alias=FAM13C1 | ||
|gene_description=family with sequence similarity 13 member C | |gene_description=family with sequence similarity 13 member C | ||
| − | |gene_name=FAM13C | + | |gene_id=220965 |
| + | |gene_name=family with sequence similarity 13 member C | ||
| + | |gene_source=HGNC:19371 | ||
| + | |gene_symbol=FAM13C | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
|nearest_promoter_id=NM_001347847 | |nearest_promoter_id=NM_001347847 | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| + | |num_trans=41 | ||
| + | |species=human | ||
| + | |start=59362748 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000470220.5 uc057tkj.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109454.1 | |tss_id=hg_109454.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:28, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000470220.5 uc057tkj.1 |
|---|---|
| Distance: | 48 |
| Num_trans: | 41 |
| All_trans: | ENST00000470220.5:48 uc057tkj.1:48 ENST00000503444.1:-71 uc057tko.1:-71 ENST00000468840.6:-144 NM_001143773:-144 uc010qie.3:-144 AK299924:-144 ENST00000618427.4:155 ENST00000611933.4:155 NM_001166698:155 NM_198215:155 NM_001001971:155 uc031wid.2:155 uc031wif.2:155 BC064431:155 ENST00000622363.4:159 uc057tkb.1:159 AK316542:159 ENST00000621119.4:185 uc057tka.1:185 ENST00000618804.4:199 uc031wie.2:199 BC036453:199 ENST00000614220.4:202 uc057tjz.1:202 ENST00000619059.4:227 uc057tkl.1:227 AK289796:229 AK294805:240 ENST00000435852.6:241 uc031wig.2:241 ENST00000422313.6:289 uc001jkp.4:289 KJ895852:289 KJ900467:289 DQ894404:289 EU176262:289 CU687880:289 ENST00000512919.5:-422 uc057tkn.1:-422 |
TATA-Box annotation
| Distance to TSS: | 149 |
|---|---|
| Nearest PromoterID: | NM_001347847 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
