Difference between revisions of "TSS:Hg 109460.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=28 |entrez_id=220965 |gc_percent=0.567164 |gene_alias=FAM13C1 |gene_description=family with sequence similarity 13 member C |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000468840.6:-21 NM_001143773:-21 uc010qie.3:-21 AK299924:-21 ENST00000503444.1:38 uc057tko.1:38 ENST00000470220.5:167 uc057tkj.1:167 ENST00000618427.4:274 ENST00000611933.4:274 NM_001166698:274 NM_198215:274 NM_001001971:274 uc031wid.2:274 uc031wif.2:274 BC064431:274 ENST00000622363.4:278 uc057tkb.1:278 AK316542:278 ENST00000512919.5:-299 uc057tkn.1:-299 ENST00000621119.4:304 uc057tka.1:304 ENST00000618804.4:318 uc031wie.2:318 BC036453:318 ENST00000614220.4:321 uc057tjz.1:321 ENST00000619059.4:346 uc057tkl.1:346 AK289796:348 AK294805:359 ENST00000435852.6:360 uc031wig.2:360 ENST00000422313.6:408 uc001jkp.4:408 KJ895852:408 KJ900467:408 DQ894404:408 EU176262:408 CU687880:408 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-21 | ||
|distance_to_tss=28 | |distance_to_tss=28 | ||
| + | |end=59362882 | ||
|entrez_id=220965 | |entrez_id=220965 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
|gene_alias=FAM13C1 | |gene_alias=FAM13C1 | ||
|gene_description=family with sequence similarity 13 member C | |gene_description=family with sequence similarity 13 member C | ||
| − | |gene_name=FAM13C | + | |gene_id=220965 |
| + | |gene_name=family with sequence similarity 13 member C | ||
| + | |gene_source=HGNC:19371 | ||
| + | |gene_symbol=FAM13C | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
|nearest_promoter_id=NM_001347847 | |nearest_promoter_id=NM_001347847 | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| + | |num_trans=41 | ||
| + | |species=human | ||
| + | |start=59362867 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000468840.6 NM_001143773 uc010qie.3 AK299924 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109460.1 | |tss_id=hg_109460.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DSU7 Q8NE31 | ||
}} | }} | ||
Revision as of 00:28, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000468840.6 NM_001143773 uc010qie.3 AK299924 |
|---|---|
| Distance: | -21 |
| Num_trans: | 41 |
| All_trans: | ENST00000468840.6:-21 NM_001143773:-21 uc010qie.3:-21 AK299924:-21 ENST00000503444.1:38 uc057tko.1:38 ENST00000470220.5:167 uc057tkj.1:167 ENST00000618427.4:274 ENST00000611933.4:274 NM_001166698:274 NM_198215:274 NM_001001971:274 uc031wid.2:274 uc031wif.2:274 BC064431:274 ENST00000622363.4:278 uc057tkb.1:278 AK316542:278 ENST00000512919.5:-299 uc057tkn.1:-299 ENST00000621119.4:304 uc057tka.1:304 ENST00000618804.4:318 uc031wie.2:318 BC036453:318 ENST00000614220.4:321 uc057tjz.1:321 ENST00000619059.4:346 uc057tkl.1:346 AK289796:348 AK294805:359 ENST00000435852.6:360 uc031wig.2:360 ENST00000422313.6:408 uc001jkp.4:408 KJ895852:408 KJ900467:408 DQ894404:408 EU176262:408 CU687880:408 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001347847 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
