Difference between revisions of "TSS:Hg 109496.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=56228 |entrez_id=288 |gc_percent=0.373134 |gene_alias=ANKYRIN-G|MRT37 |gene_description=ankyrin 3 |gene_name=ANK3 |gene_type=pr...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MRT37= | ||
| + | |all_trans=ENST00000508449.1:67 uc057tlv.1:67 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=67 | ||
|distance_to_tss=56228 | |distance_to_tss=56228 | ||
| + | |end=60084794 | ||
|entrez_id=288 | |entrez_id=288 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
|gene_alias=ANKYRIN-G|MRT37 | |gene_alias=ANKYRIN-G|MRT37 | ||
|gene_description=ankyrin 3 | |gene_description=ankyrin 3 | ||
| − | |gene_name=ANK3 | + | |gene_id=288 |
| + | |gene_name="ankyrin 3, node of Ranvier (ankyrin G)" | ||
| + | |gene_source=HGNC:494 | ||
| + | |gene_symbol=ANK3 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:494 | ||
|nearest_ensembl=ENSG00000151150 | |nearest_ensembl=ENSG00000151150 | ||
|nearest_promoter_id=NM_001149 | |nearest_promoter_id=NM_001149 | ||
|nearest_refseq=NM_001149 | |nearest_refseq=NM_001149 | ||
|nearest_unigene=Hs.499725 | |nearest_unigene=Hs.499725 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=60084781 | ||
| + | |strand=- | ||
|tata_box="-90(GCTTTTAAATAG,+,0.00),-88(TTTTAAATAGCC,+,0.00),35(TTCCATATATGG,-,0.00),37(CCATATATGGCC,+,0.00)" | |tata_box="-90(GCTTTTAAATAG,+,0.00),-88(TTTTAAATAGCC,+,0.00),35(TTCCATATATGG,-,0.00),37(CCATATATGGCC,+,0.00)" | ||
| + | |transcript_name=ENST00000508449.1 uc057tlv.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_109496.1 | |tss_id=hg_109496.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:29, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000508449.1 uc057tlv.1 |
|---|---|
| Distance: | 67 |
| Num_trans: | 2 |
| All_trans: | ENST00000508449.1:67 uc057tlv.1:67 |
TATA-Box annotation
| Distance to TSS: | 56228 |
|---|---|
| Nearest PromoterID: | NM_001149 |
| Entrez ID: | 288 |
| Nearest Unigene: | Hs.499725 |
| Nearest Refseq: | NM_001149 |
| Nearest Ensembl: | ENSG00000151150 |
| Gene Name: | "ankyrin 3, node of Ranvier (ankyrin G)" |
| Gene Alias: | ANKYRIN-G |
| Gene Description: | ankyrin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-90(GCTTTTAAATAG,+,0.00),-88(TTTTAAATAGCC,+,0.00),35(TTCCATATATGG,-,0.00),37(CCATATATGGCC,+,0.00)" |
