Difference between revisions of "TSS:Hg 111740.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.185 |distance_to_tss=28 |entrez_id=2263 |gc_percent=0.810945 |gene_alias=BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 |gene_descript...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |BEK= | ||
| + | |BFR-1= | ||
| + | |CD332= | ||
| + | |CEK3= | ||
| + | |CFD1= | ||
| + | |ECT1= | ||
| + | |JWS= | ||
| + | |K-SAM= | ||
| + | |KGFR= | ||
| + | |TK14= | ||
| + | |TK25= | ||
| + | |all_trans=ENST00000613048.4:0 ENST00000356226.8:0 ENST00000604236.5:0 ENST00000369059.5:0 ENST00000457416.6:0 ENST00000360144.7:0 NR_073009:0 NM_000141:0 NM_001144918:0 NM_001144917:0 NM_022970:0 NM_001320658:0 NM_001144919:0 uc057wkv.1:0 uc010qtm.3:0 uc057wky.1:0 uc057wkz.1:0 uc057wle.1:0 uc057wlf.1:0 BC039243:0 BC096749:0 M97193:0 AK026508:0 M35718:2 ENST00000336553.10:4 uc057wli.1:4 ENST00000369060.8:102 ENST00000359354.6:102 uc010qtl.3:102 uc057wll.1:102 M87771:102 ENST00000369058.7:166 uc057wlh.1:166 AB030073:166 M80634:166 AB030075:166 AB030074:166 AB030076:166 AB030077:166 AB030078:166 M87772:314 ENST00000358487.9:316 uc057wkw.1:316 M87770:316 ENST00000490349.5:328 uc057wlk.1:328 U11814:328 X52832:410 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
| + | |distance=0 | ||
|distance_to_tss=28 | |distance_to_tss=28 | ||
| + | |end=121598461 | ||
|entrez_id=2263 | |entrez_id=2263 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
|gene_alias=BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 | |gene_alias=BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 | ||
|gene_description=fibroblast growth factor receptor 2 | |gene_description=fibroblast growth factor receptor 2 | ||
| − | |gene_name=FGFR2 | + | |gene_id=2263 |
| + | |gene_name=fibroblast growth factor receptor 2 | ||
| + | |gene_source=HGNC:3689 | ||
| + | |gene_symbol=FGFR2 | ||
| + | |gene_synonyms=CD332 CEK3 ECT1 K-SAM TK14 TK25 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3689 | ||
|nearest_ensembl=ENSG00000066468 | |nearest_ensembl=ENSG00000066468 | ||
|nearest_promoter_id=NM_022970 | |nearest_promoter_id=NM_022970 | ||
|nearest_refseq=NM_000141 | |nearest_refseq=NM_000141 | ||
|nearest_unigene=Hs.533683 | |nearest_unigene=Hs.533683 | ||
| + | |num_trans=48 | ||
| + | |species=human | ||
| + | |start=121598399 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000613048.4 ENST00000356226.8 ENST00000604236.5 ENST00000369059.5 ENST00000457416.6 ENST00000360144.7 NR_073009 NM_000141 NM_001144918 NM_001144917 NM_022970 NM_001320658 NM_001144919 uc057wkv.1 uc010qtm.3 uc057wky.1 uc057wkz.1 uc057wle.1 uc057wlf.1 BC039243 BC096749 M97193 AK026508 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_111740.1 | |tss_id=hg_111740.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=D2CGD1 E7EVR7 P21802 S4R3B2 | ||
}} | }} | ||
Revision as of 02:05, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000613048.4 ENST00000356226.8 ENST00000604236.5 ENST00000369059.5 ENST00000457416.6 ENST00000360144.7 NR_073009 NM_000141 NM_001144918 NM_001144917 NM_022970 NM_001320658 NM_001144919 uc057wkv.1 uc010qtm.3 uc057wky.1 uc057wkz.1 uc057wle.1 uc057wlf.1 BC039243 BC096749 M97193 AK026508 |
|---|---|
| Distance: | 0 |
| Num_trans: | 48 |
| All_trans: | ENST00000613048.4:0 ENST00000356226.8:0 ENST00000604236.5:0 ENST00000369059.5:0 ENST00000457416.6:0 ENST00000360144.7:0 NR_073009:0 NM_000141:0 NM_001144918:0 NM_001144917:0 NM_022970:0 NM_001320658:0 NM_001144919:0 uc057wkv.1:0 uc010qtm.3:0 uc057wky.1:0 uc057wkz.1:0 uc057wle.1:0 uc057wlf.1:0 BC039243:0 BC096749:0 M97193:0 AK026508:0 M35718:2 ENST00000336553.10:4 uc057wli.1:4 ENST00000369060.8:102 ENST00000359354.6:102 uc010qtl.3:102 uc057wll.1:102 M87771:102 ENST00000369058.7:166 uc057wlh.1:166 AB030073:166 M80634:166 AB030075:166 AB030074:166 AB030076:166 AB030077:166 AB030078:166 M87772:314 ENST00000358487.9:316 uc057wkw.1:316 M87770:316 ENST00000490349.5:328 uc057wlk.1:328 U11814:328 X52832:410 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_022970 |
| Entrez ID: | 2263 |
| Nearest Unigene: | Hs.533683 |
| Nearest Refseq: | NM_000141 |
| Nearest Ensembl: | ENSG00000066468 |
| Gene Name: | fibroblast growth factor receptor 2 |
| Gene Alias: | BBDS |
| Gene Description: | fibroblast growth factor receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
