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Difference between revisions of "Template:TSSDetail"

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Line 34: Line 34:
 
<table class="inner" >
 
<table class="inner" >
 
<tr><th scope="row" class="item_label">TSS ID:</th><td>{{{tss_id}}}</td></tr>
 
<tr><th scope="row" class="item_label">TSS ID:</th><td>{{{tss_id}}}</td></tr>
−
<tr><th scope="row" class="item_label">Species:</th><td>{{{species}}}</td></tr>
+
<tr><th scope="row" class="item_label">Species:</th><td>{{{species|}}}</td></tr>
−
<tr><th scope="row" class="item_label">Chr:</th><td>{{{chr}}}</td></tr>
+
<tr><th scope="row" class="item_label">Chr:</th><td>{{{chr|}}}</td></tr>
−
<tr><th scope="row" class="item_label">TSS Classification:</th><td>{{{tss_classification}}}</td></tr>
+
<tr><th scope="row" class="item_label">TSS Classification:</th><td>{{{tss_classification|}}}</td></tr>
 
</table>
 
</table>
 
</div>
 
</div>
 
<div style="width:42%; float:right;margin-left:40px">
 
<div style="width:42%; float:right;margin-left:40px">
 
<table class="inner" >
 
<table class="inner" >
−
<tr><th scope="row" class="item_label">Start:</th><td>{{{start}}}</td></tr>
+
<tr><th scope="row" class="item_label">Start:</th><td>{{{start|}}}</td></tr>
−
<tr><th scope="row" class="item_label">End:</th><td>{{{end}}}</td></tr>
+
<tr><th scope="row" class="item_label">End:</th><td>{{{end|}}}</td></tr>
−
<tr><th scope="row" class="item_label">Strand:</th><td>{{{strand}}}</td></tr>
+
<tr><th scope="row" class="item_label">Strand:</th><td>{{{strand|}}}</td></tr>
−
<tr><th scope="row" class="item_label">TSS Score:</th><td>{{{tss_score}}}</td></tr>
+
<tr><th scope="row" class="item_label">TSS Score:</th><td>{{{tss_score|}}}</td></tr>
 
</table>
 
</table>
 
</div></td></tr>
 
</div></td></tr>
Line 55: Line 55:
 
<div style="width:42%; float:left;">
 
<div style="width:42%; float:left;">
 
<table class="inner" >
 
<table class="inner" >
−
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
+
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name|}}}</td></tr>
−
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
+
<tr><th scope="row" align="left">Distance:</th><td>{{{distance|}}}</td></tr>
−
<tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id}}}</td></tr>
+
<tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id|}}}</td></tr>
−
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id}}}</td></tr>
+
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id|}}}</td></tr>
−
<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id}}}</td></tr>
+
<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id|}}}</td></tr>
 
</table></div>
 
</table></div>
 
<div style="width:42%; float:right;">
 
<div style="width:42%; float:right;">
 
<table class="inner" >
 
<table class="inner" >
−
<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name}}}</td></tr>
+
<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name|}}}</td></tr>
 
<tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol}}}</td></tr>
 
<tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol}}}</td></tr>
−
<tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms}}}</td></tr>
+
<tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms|}}}</td></tr>
−
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source}}}</td></tr>
+
<tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source|}}}</td></tr>
 
</table>
 
</table>
 
</div></td></tr>
 
</div></td></tr>
Line 75: Line 75:
 
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 
<hr width="200px" size="2" style="text-align:left;margin-left:0" noshade>
 
<table class="inner" border="0" >
 
<table class="inner" border="0" >
−
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr>
+
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name|}}}</td></tr>
−
<tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr>
+
<tr><th scope="row" align="left">Distance:</th><td>{{{distance|}}}</td></tr>
−
<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans}}}</td></tr>
+
<tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans|}}}</td></tr>
−
<tr><th scope="row" align="left">All_trans:</th><td>{{{all_trans}}}</td></tr>
+
<tr><th scope="row" align="left">All_trans:</th><td>{{{all_trans|}}}</td></tr>
 
</table>
 
</table>
 
<br/>
 
<br/>
Line 86: Line 86:
 
<table class="inner" style="width: 600px;table-layout:fixed;">
 
<table class="inner" style="width: 600px;table-layout:fixed;">
 
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss|}}}</td></tr>
 
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq|}}}</td></tr>
 
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl}}}</td></tr>
 
<tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent|}}}</td></tr>
−
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent}}}</td></tr>
+
<tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent|}}}</td></tr>
 
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box|}}}</td></tr>
 
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box|}}}</td></tr>
 
</table>
 
</table>

Revision as of 13:41, 29 March 2018

Basic information about the TSS

TSS ID:{{{tss_id}}}
Species:
Chr:
TSS Classification:
Start:
End:
Strand:
TSS Score:



Gene and protein annotation

Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:
Gene_source:



Transcript annotation

Transcript_name:
Distance:
Num_trans:
All_trans:



TATA-Box annotation

Distance to TSS:
Nearest PromoterID:
Entrez ID:
Nearest Unigene:
Nearest Refseq:
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:
Gene Alias:
Gene Description:
Gene Type:
CpG%:
GC%:
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):







"{{{cpg_percent}}}" is not a number. "{{{gc_percent}}}" is not a number.






"{{{start}}}" is not a number. "{{{end}}}" is not a number. "{{{tss_score}}}" is not a number.


"{{{num_trans}}}" is not a number.

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