Difference between revisions of "TSS:Hg 119557.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=504 |entrez_id=29763 |gc_percent=0.691542 |gene_alias=SDPIII |gene_description=protein kinase C and casein kinase substrate in n...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000525725.5:-30 uc058bbg.1:-30 AK300968:-486 AK000577:-487 ENST00000539589.5:-492 ENST00000528462.5:-492 NM_001184975:-492 uc001ndw.4:-492 uc058bbc.1:-492 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=-30 | ||
|distance_to_tss=504 | |distance_to_tss=504 | ||
| + | |end=47185389 | ||
|entrez_id=29763 | |entrez_id=29763 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=SDPIII | |gene_alias=SDPIII | ||
|gene_description=protein kinase C and casein kinase substrate in neurons 3 | |gene_description=protein kinase C and casein kinase substrate in neurons 3 | ||
| − | |gene_name=PACSIN3 | + | |gene_id=29763 |
| + | |gene_name=protein kinase C and casein kinase substrate in neurons 3 | ||
| + | |gene_source=HGNC:8572 | ||
| + | |gene_symbol=PACSIN3 | ||
| + | |gene_synonyms=SDPIII | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8572 | ||
|nearest_ensembl=ENSG00000165912 | |nearest_ensembl=ENSG00000165912 | ||
|nearest_promoter_id=NM_001184975 | |nearest_promoter_id=NM_001184975 | ||
|nearest_refseq=NM_016223 | |nearest_refseq=NM_016223 | ||
|nearest_unigene=Hs.334639 | |nearest_unigene=Hs.334639 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=47185364 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000525725.5 uc058bbg.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_119557.1 | |tss_id=hg_119557.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E9PJ75 | ||
}} | }} | ||
Revision as of 07:38, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000525725.5 uc058bbg.1 |
|---|---|
| Distance: | -30 |
| Num_trans: | 9 |
| All_trans: | ENST00000525725.5:-30 uc058bbg.1:-30 AK300968:-486 AK000577:-487 ENST00000539589.5:-492 ENST00000528462.5:-492 NM_001184975:-492 uc001ndw.4:-492 uc058bbc.1:-492 |
TATA-Box annotation
| Distance to TSS: | 504 |
|---|---|
| Nearest PromoterID: | NM_001184975 |
| Entrez ID: | 29763 |
| Nearest Unigene: | Hs.334639 |
| Nearest Refseq: | NM_016223 |
| Nearest Ensembl: | ENSG00000165912 |
| Gene Name: | protein kinase C and casein kinase substrate in neurons 3 |
| Gene Alias: | SDPIII |
| Gene Description: | protein kinase C and casein kinase substrate in neurons 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
