Difference between revisions of "TSS:Hg 120523.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=6984 |entrez_id=29901 |gc_percent=0.706468 |gene_alias=HSU79266|SHD1 |gene_description=SAC3 domain containing 1 |gene_name=SAC3...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SHD1= | ||
| + | |all_trans=ENST00000532802.5:0 ENST00000531174.1:0 uc058dcz.1:0 uc058ddf.1:0 ENST00000533842.5:13 uc058ddb.1:13 ENST00000531746.1:18 uc058dde.1:18 AF001547:18 ENST00000530139.2:-31 uc058ddh.1:-31 ENST00000526516.5:-35 uc058dcy.1:-35 ENST00000532450.5:142 uc058dcq.1:142 ENST00000529685.5:-225 uc058ddg.1:-225 AF010141:-410 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=0 | ||
|distance_to_tss=6984 | |distance_to_tss=6984 | ||
| + | |end=65047902 | ||
|entrez_id=29901 | |entrez_id=29901 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=HSU79266|SHD1 | |gene_alias=HSU79266|SHD1 | ||
|gene_description=SAC3 domain containing 1 | |gene_description=SAC3 domain containing 1 | ||
| − | |gene_name= | + | |gene_id=10004 |
| + | |gene_name=N-acetylated alpha-linked acidic dipeptidase-like 1 | ||
| + | |gene_source=HGNC:23536 | ||
| + | |gene_symbol=NAALADL1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23536 | ||
|nearest_ensembl=ENSG00000168061 | |nearest_ensembl=ENSG00000168061 | ||
|nearest_promoter_id=NM_013299 | |nearest_promoter_id=NM_013299 | ||
|nearest_refseq=NM_013299 | |nearest_refseq=NM_013299 | ||
|nearest_unigene=Hs.23642 | |nearest_unigene=Hs.23642 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=65047873 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000532802.5 ENST00000531174.1 uc058dcz.1 uc058ddf.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_120523.1 | |tss_id=hg_120523.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E9PKW7 | ||
}} | }} | ||
Revision as of 08:20, 9 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000532802.5 ENST00000531174.1 uc058dcz.1 uc058ddf.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000532802.5:0 ENST00000531174.1:0 uc058dcz.1:0 uc058ddf.1:0 ENST00000533842.5:13 uc058ddb.1:13 ENST00000531746.1:18 uc058dde.1:18 AF001547:18 ENST00000530139.2:-31 uc058ddh.1:-31 ENST00000526516.5:-35 uc058dcy.1:-35 ENST00000532450.5:142 uc058dcq.1:142 ENST00000529685.5:-225 uc058ddg.1:-225 AF010141:-410 |
TATA-Box annotation
| Distance to TSS: | 6984 |
|---|---|
| Nearest PromoterID: | NM_013299 |
| Entrez ID: | 29901 |
| Nearest Unigene: | Hs.23642 |
| Nearest Refseq: | NM_013299 |
| Nearest Ensembl: | ENSG00000168061 |
| Gene Name: | N-acetylated alpha-linked acidic dipeptidase-like 1 |
| Gene Alias: | HSU79266 |
| Gene Description: | SAC3 domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
