Difference between revisions of "TSS:Mm 1520.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK011784:-15 X81580:-23 BC054473:-24 ENSMUST00000047328.10:-28 BC012724:-28 AK011790:28 AK012703:-39 NM_008342:-51 uc007bkw.2:-51 |chr=chr1 |cpg_percent...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |IBP-2= | ||
| + | |Igfbp-2= | ||
|all_trans=AK011784:-15 X81580:-23 BC054473:-24 ENSMUST00000047328.10:-28 BC012724:-28 AK011790:28 AK012703:-39 NM_008342:-51 uc007bkw.2:-51 | |all_trans=AK011784:-15 X81580:-23 BC054473:-24 ENSMUST00000047328.10:-28 BC012724:-28 AK011790:28 AK012703:-39 NM_008342:-51 uc007bkw.2:-51 | ||
|chr=chr1 | |chr=chr1 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=56 | |distance_to_tss=56 | ||
|end=72824541 | |end=72824541 | ||
| + | |end_of_center_position=72824536 | ||
|entrez_id=16008 | |entrez_id=16008 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=AI255832 | + | |gene_alias=AI255832 |
|gene_description=insulin-like growth factor binding protein 2 | |gene_description=insulin-like growth factor binding protein 2 | ||
|gene_id=16008 | |gene_id=16008 | ||
| Line 17: | Line 20: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:96437 | |hgnc_mgi_id=MGI:96437 | ||
| + | |mIGFBP-2= | ||
|nearest_ensembl=ENSMUSG00000039323 | |nearest_ensembl=ENSMUSG00000039323 | ||
|nearest_promoter_id=NM_008342 | |nearest_promoter_id=NM_008342 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=72824530 | |start=72824530 | ||
| + | |start_of_center_position=72824535 | ||
|strand=+ | |strand=+ | ||
|tata_box="-78(GGCTTTTTAGGA,-,0.00)" | |tata_box="-78(GGCTTTTTAGGA,-,0.00)" | ||
Revision as of 19:58, 10 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 72824535 |
|---|---|
| End of the center position in the TSS region: | 72824536 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK011784 |
|---|---|
| Distance: | -15 |
| Num_trans: | 9 |
| All_trans: | AK011784:-15 X81580:-23 BC054473:-24 ENSMUST00000047328.10:-28 BC012724:-28 AK011790:28 AK012703:-39 NM_008342:-51 uc007bkw.2:-51 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_008342 |
| Entrez ID: | 16008 |
| Nearest Unigene: | Mm.141936 |
| Nearest Refseq: | NM_008342 |
| Nearest Ensembl: | ENSMUSG00000039323 |
| Gene Name: | insulin-like growth factor binding protein 2 |
| Gene Alias: | AI255832 |
| Gene Description: | insulin-like growth factor binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-78(GGCTTTTTAGGA,-,0.00)" |
