Difference between revisions of "TSS:Hg 3079.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000403491.7:12 NM_005595:12 NM_001134673:12 uc001czw.4:12 AB037860:12 AK299356:271 ENST00000371187.7:325 uc001czv.4:325 BC022264:327 ENST000003711...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NF-I/A= | ||
| + | |NF1-A= | ||
| + | |NFI-A= | ||
| + | |NFI-L= | ||
|all_trans=ENST00000403491.7:12 NM_005595:12 NM_001134673:12 uc001czw.4:12 AB037860:12 AK299356:271 ENST00000371187.7:325 uc001czv.4:325 BC022264:327 ENST00000371189.8:-361 NM_001145512:-361 uc010oos.3:-361 AK299579:-361 ENST00000485903.6:427 uc057hbm.1:427 ENST00000371185.6:452 uc057hbn.1:452 ENST00000479364.1:-456 uc057hbl.1:-456 ENST00000371184.6:458 uc057hbo.1:458 CU692518:496 AB384210:496 DQ893250:496 DQ896579:496 KJ905238:496 | |all_trans=ENST00000403491.7:12 NM_005595:12 NM_001134673:12 uc001czw.4:12 AB037860:12 AK299356:271 ENST00000371187.7:325 uc001czv.4:325 BC022264:327 ENST00000371189.8:-361 NM_001145512:-361 uc010oos.3:-361 AK299579:-361 ENST00000485903.6:427 uc057hbm.1:427 ENST00000371185.6:452 uc057hbn.1:452 ENST00000479364.1:-456 uc057hbl.1:-456 ENST00000371184.6:458 uc057hbo.1:458 CU692518:496 AB384210:496 DQ893250:496 DQ896579:496 KJ905238:496 | ||
|chr=chr1 | |chr=chr1 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=-49 | |distance_to_tss=-49 | ||
|end=61082296 | |end=61082296 | ||
| + | |end_of_center_position=61082260 | ||
|entrez_id=4774 | |entrez_id=4774 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=CTF | + | |gene_alias=CTF |
|gene_description=nuclear factor I A | |gene_description=nuclear factor I A | ||
|gene_id=4774 | |gene_id=4774 | ||
| Line 24: | Line 29: | ||
|species=human | |species=human | ||
|start=61082222 | |start=61082222 | ||
| + | |start_of_center_position=61082259 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000403491.7 NM_005595 NM_001134673 uc001czw.4 AB037860 | |transcript_name=ENST00000403491.7 NM_005595 NM_001134673 uc001czw.4 AB037860 | ||
Revision as of 01:32, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 61082259 |
|---|---|
| End of the center position in the TSS region: | 61082260 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000403491.7 NM_005595 NM_001134673 uc001czw.4 AB037860 |
|---|---|
| Distance: | 12 |
| Num_trans: | 26 |
| All_trans: | ENST00000403491.7:12 NM_005595:12 NM_001134673:12 uc001czw.4:12 AB037860:12 AK299356:271 ENST00000371187.7:325 uc001czv.4:325 BC022264:327 ENST00000371189.8:-361 NM_001145512:-361 uc010oos.3:-361 AK299579:-361 ENST00000485903.6:427 uc057hbm.1:427 ENST00000371185.6:452 uc057hbn.1:452 ENST00000479364.1:-456 uc057hbl.1:-456 ENST00000371184.6:458 uc057hbo.1:458 CU692518:496 AB384210:496 DQ893250:496 DQ896579:496 KJ905238:496 |
TATA-Box annotation
| Distance to TSS: | -49 |
|---|---|
| Nearest PromoterID: | NM_005595 |
| Entrez ID: | 4774 |
| Nearest Unigene: | Hs.740757 |
| Nearest Refseq: | NM_005595 |
| Nearest Ensembl: | ENSG00000162599 |
| Gene Name: | nuclear factor I/A |
| Gene Alias: | CTF |
| Gene Description: | nuclear factor I A |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
