Difference between revisions of "TSS:Hg 237732.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_004597:55 NM_177542:55 ENST00000588301.5:-76 uc061abm.1:-76 ENST00000342669.7:-93 uc002pcw.4:-93 ENST00000391932.7:299 uc002pcv.4:299 ENST00000587367...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SNRPD1= | ||
| + | |Sm-D2= | ||
|all_trans=NM_004597:55 NM_177542:55 ENST00000588301.5:-76 uc061abm.1:-76 ENST00000342669.7:-93 uc002pcw.4:-93 ENST00000391932.7:299 uc002pcv.4:299 ENST00000587367.5:300 uc061abk.1:300 AK291912:318 U15008:322 ENST00000585392.2:323 ENST00000590212.1:323 uc061abj.1:323 uc061abn.1:323 BC000486:326 ENST00000587579.1:-329 uc061abo.1:-329 ENST00000588599.5:469 uc061abl.1:469 | |all_trans=NM_004597:55 NM_177542:55 ENST00000588301.5:-76 uc061abm.1:-76 ENST00000342669.7:-93 uc002pcw.4:-93 ENST00000391932.7:299 uc002pcv.4:299 ENST00000587367.5:300 uc061abk.1:300 AK291912:318 U15008:322 ENST00000585392.2:323 ENST00000590212.1:323 uc061abj.1:323 uc061abn.1:323 BC000486:326 ENST00000587579.1:-329 uc061abo.1:-329 ENST00000588599.5:469 uc061abl.1:469 | ||
|chr=chr19 | |chr=chr19 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=76 | |distance_to_tss=76 | ||
|end=45692240 | |end=45692240 | ||
| + | |end_of_center_position=51646825 | ||
|entrez_id=6633 | |entrez_id=6633 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=SMD2 | + | |gene_alias=SMD2 |
|gene_description=small nuclear ribonucleoprotein D2 polypeptide | |gene_description=small nuclear ribonucleoprotein D2 polypeptide | ||
|gene_id=6633 | |gene_id=6633 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=45692239 | |start=45692239 | ||
| + | |start_of_center_position=51646824 | ||
|strand=- | |strand=- | ||
|transcript_name=NM_004597 NM_177542 | |transcript_name=NM_004597 NM_177542 | ||
Revision as of 02:54, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 51646824 |
|---|---|
| End of the center position in the TSS region: | 51646825 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_004597 NM_177542 |
|---|---|
| Distance: | 55 |
| Num_trans: | 21 |
| All_trans: | NM_004597:55 NM_177542:55 ENST00000588301.5:-76 uc061abm.1:-76 ENST00000342669.7:-93 uc002pcw.4:-93 ENST00000391932.7:299 uc002pcv.4:299 ENST00000587367.5:300 uc061abk.1:300 AK291912:318 U15008:322 ENST00000585392.2:323 ENST00000590212.1:323 uc061abj.1:323 uc061abn.1:323 BC000486:326 ENST00000587579.1:-329 uc061abo.1:-329 ENST00000588599.5:469 uc061abl.1:469 |
TATA-Box annotation
| Distance to TSS: | 76 |
|---|---|
| Nearest PromoterID: | NM_004597 |
| Entrez ID: | 6633 |
| Nearest Unigene: | Hs.515472 |
| Nearest Refseq: | NM_004597 |
| Nearest Ensembl: | ENSG00000125743 |
| Gene Name: | small nuclear ribonucleoprotein D2 polypeptide |
| Gene Alias: | SMD2 |
| Gene Description: | small nuclear ribonucleoprotein D2 polypeptide |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
