Difference between revisions of "TSS:Hg 100720.1"
From referenceTSS
| Line 7: | Line 7: | ||
|distance_to_tss=187 | |distance_to_tss=187 | ||
|end=37034300 | |end=37034300 | ||
| + | |end_of_center_position=37034292 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=ALL3 | + | |gene_alias=ALL3 |
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
|gene_id=5079 | |gene_id=5079 | ||
| Line 25: | Line 26: | ||
|species=human | |species=human | ||
|start=37034283 | |start=37034283 | ||
| + | |start_of_center_position=37034291 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000358127.8 uc003zzo.3 | |transcript_name=ENST00000358127.8 uc003zzo.3 | ||
Revision as of 06:57, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 37034291 |
|---|---|
| End of the center position in the TSS region: | 37034292 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000358127.8 uc003zzo.3 |
|---|---|
| Distance: | 99 |
| Num_trans: | 56 |
| All_trans: | ENST00000358127.8:99 uc003zzo.3:99 M96944:178 NM_001280554:-179 NM_001280553:-179 NM_001280552:-179 NM_001280551:-179 NM_001280549:-179 NM_001280548:-179 NM_001280547:-179 NM_001280555:-179 NM_016734:-179 NM_001280556:-179 NM_001280550:-179 NR_103999:-179 NR_104000:-179 ENST00000377853.6:243 ENST00000377840.6:243 ENST00000377852.6:243 ENST00000523241.5:243 ENST00000520154.5:243 uc064tbd.1:243 uc010mlo.3:243 uc010mlp.3:243 uc010mls.3:243 uc010mlr.3:243 AY463952:243 AY463953:243 AY463954:243 AY463955:243 AY463956:243 AY463957:243 ENST00000520281.5:253 ENST00000446742.5:253 ENST00000522003.5:253 ENST00000523145.5:253 ENST00000523493.5:253 ENST00000414447.5:253 ENST00000377847.6:253 uc011lpw.3:253 uc011lpz.3:253 uc011lpx.3:253 uc011lqc.3:253 uc011lqa.3:253 uc011lpy.3:253 uc064tbe.1:253 FJ626419:253 FJ626420:253 FJ626421:253 FJ626422:253 FJ626423:253 FJ626424:253 FJ626425:253 BC156189:253 BC156927:253 AB529192:253 |
TATA-Box annotation
| Distance to TSS: | 187 |
|---|---|
| Nearest PromoterID: | NM_001280549 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
