Difference between revisions of "TSS:Hg 101575.1"
From referenceTSS
| Line 12: | Line 12: | ||
|distance_to_tss=141 | |distance_to_tss=141 | ||
|end=95516831 | |end=95516831 | ||
| + | |end_of_center_position=95516825 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 30: | Line 31: | ||
|species=human | |species=human | ||
|start=95516817 | |start=95516817 | ||
| + | |start_of_center_position=95516824 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 | |transcript_name=ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 | ||
Revision as of 09:49, 11 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 95516824 |
|---|---|
| End of the center position in the TSS region: | 95516825 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 |
|---|---|
| Distance: | -134 |
| Num_trans: | 20 |
| All_trans: | ENST00000437951.5:-134 ENST00000375274.6:-134 NM_001083603:-134 NM_001083602:-134 uc010mrr.4:-134 uc004avm.5:-134 AB189436:-134 AB189437:-134 ENST00000551623.1:160 ENST00000551425.1:160 uc064unc.1:160 uc010mrw.2:160 AB239329:160 AB212827:160 AB212828:160 ENST00000430669.6:-226 ENST00000468211.6:-226 uc064umn.1:-226 uc004avo.3:-226 BC043542:-226 |
TATA-Box annotation
| Distance to TSS: | 141 |
|---|---|
| Nearest PromoterID: | NM_001083602 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
