Difference between revisions of "TSS:Hg 102074.1"
From referenceTSS
| Line 10: | Line 10: | ||
|distance_to_tss=65 | |distance_to_tss=65 | ||
|end=112718145 | |end=112718145 | ||
| + | |end_of_center_position=112718085 | ||
|entrez_id=58493 | |entrez_id=58493 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=C9orf80 | + | |gene_alias=C9orf80 |
|gene_description=INTS3 and NABP interacting protein | |gene_description=INTS3 and NABP interacting protein | ||
|gene_id=58493 | |gene_id=58493 | ||
| Line 29: | Line 30: | ||
|species=human | |species=human | ||
|start=112718023 | |start=112718023 | ||
| + | |start_of_center_position=112718084 | ||
|strand=- | |strand=- | ||
|tata_box="43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)" | |tata_box="43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)" | ||
Revision as of 11:32, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 112718084 |
|---|---|
| End of the center position in the TSS region: | 112718085 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 uc064vcp.1 uc064vcr.1 uc064vcs.1 uc064vct.1 BC014881 AK000637 BC065210 AF161409 AF161411 AK310007 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000497712.6:0 ENST00000481146.6:0 ENST00000374234.1:0 ENST00000476599.2:0 NM_021218:0 uc064vcp.1:0 uc064vcr.1:0 uc064vcs.1:0 uc064vct.1:0 BC014881:0 AK000637:0 BC065210:0 AF161409:0 AF161411:0 AK310007:0 ENST00000374236.5:-4 uc064vcq.1:-4 ENST00000374242.8:-91 uc004bgg.4:-91 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001329590 |
| Entrez ID: | 58493 |
| Nearest Unigene: | Hs.658575 |
| Nearest Refseq: | NM_021218 |
| Nearest Ensembl: | ENSG00000148153 |
| Gene Name: | INTS3 and NABP interacting protein |
| Gene Alias: | C9orf80 |
| Gene Description: | INTS3 and NABP interacting protein |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)" |
