Difference between revisions of "TSS:Hg 23301.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000463502.1:-248 uc061oxq.1:-248 NM_004180:-259 NM_133484:-259 U63830:-259 U59863:-259 ENST00000432002.5:-287 uc061oxp.1:-287 ENST00000259075.6:-3...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ITRAF= | ||
| + | |TRAF2= | ||
|all_trans=ENST00000463502.1:-248 uc061oxq.1:-248 NM_004180:-259 NM_133484:-259 U63830:-259 U59863:-259 ENST00000432002.5:-287 uc061oxp.1:-287 ENST00000259075.6:-306 uc002ubr.3:-306 | |all_trans=ENST00000463502.1:-248 uc061oxq.1:-248 NM_004180:-259 NM_133484:-259 U63830:-259 U59863:-259 ENST00000432002.5:-287 uc061oxp.1:-287 ENST00000259075.6:-306 uc002ubr.3:-306 | ||
|chr=chr2 | |chr=chr2 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=266 | |distance_to_tss=266 | ||
|end=161137229 | |end=161137229 | ||
| + | |end_of_center_position=161137222 | ||
|entrez_id=10010 | |entrez_id=10010 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| − | |gene_alias=I-TRAF | + | |gene_alias=I-TRAF |
|gene_description=TRAF family member associated NFKB activator | |gene_description=TRAF family member associated NFKB activator | ||
|gene_id=10010 | |gene_id=10010 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=161137213 | |start=161137213 | ||
| + | |start_of_center_position=161137221 | ||
|strand=+ | |strand=+ | ||
|tata_box="7(GGCCTTTAAAAA,-,0.00),8(GCCTTTAAAAAA,-,0.00)" | |tata_box="7(GGCCTTTAAAAA,-,0.00),8(GCCTTTAAAAAA,-,0.00)" | ||
Revision as of 20:40, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 161137221 |
|---|---|
| End of the center position in the TSS region: | 161137222 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000463502.1 uc061oxq.1 |
|---|---|
| Distance: | -248 |
| Num_trans: | 10 |
| All_trans: | ENST00000463502.1:-248 uc061oxq.1:-248 NM_004180:-259 NM_133484:-259 U63830:-259 U59863:-259 ENST00000432002.5:-287 uc061oxp.1:-287 ENST00000259075.6:-306 uc002ubr.3:-306 |
TATA-Box annotation
| Distance to TSS: | 266 |
|---|---|
| Nearest PromoterID: | NM_004180 |
| Entrez ID: | 10010 |
| Nearest Unigene: | Hs.132257 |
| Nearest Refseq: | NM_004180 |
| Nearest Ensembl: | ENSG00000136560 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | I-TRAF |
| Gene Description: | TRAF family member associated NFKB activator |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "7(GGCCTTTAAAAA,-,0.00),8(GCCTTTAAAAAA,-,0.00)" |
