Difference between revisions of "TSS:Hg 23304.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000461338.5:0 ENST00000429217.5:0 ENST00000406287.5:0 ENST00000402568.5:0 uc061oxs.1:0 uc061oxt.1:0 uc061oxu.1:0 uc061oxv.1:0 ENST00000440506.5:-1...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ITRAF= | ||
| + | |TRAF2= | ||
|all_trans=ENST00000461338.5:0 ENST00000429217.5:0 ENST00000406287.5:0 ENST00000402568.5:0 uc061oxs.1:0 uc061oxt.1:0 uc061oxu.1:0 uc061oxv.1:0 ENST00000440506.5:-18 uc061oxr.1:-18 ENST00000392749.6:-20 uc002ubs.4:-20 ENST00000457887.5:41 uc061oxw.1:41 ENST00000477952.1:62 uc061oxx.1:62 ENST00000441987.5:63 ENST00000432692.6:63 NM_001199135:63 uc061oxy.1:63 uc061oxz.1:63 AK313096:63 ENST00000494976.1:67 uc061oya.1:67 BC067779:71 ENST00000405852.5:72 uc061oyb.1:72 ENST00000483622.1:92 uc061oyc.1:92 ENST00000456358.5:361 uc061oyd.1:361 | |all_trans=ENST00000461338.5:0 ENST00000429217.5:0 ENST00000406287.5:0 ENST00000402568.5:0 uc061oxs.1:0 uc061oxt.1:0 uc061oxu.1:0 uc061oxv.1:0 ENST00000440506.5:-18 uc061oxr.1:-18 ENST00000392749.6:-20 uc002ubs.4:-20 ENST00000457887.5:41 uc061oxw.1:41 ENST00000477952.1:62 uc061oxx.1:62 ENST00000441987.5:63 ENST00000432692.6:63 NM_001199135:63 uc061oxy.1:63 uc061oxz.1:63 AK313096:63 ENST00000494976.1:67 uc061oya.1:67 BC067779:71 ENST00000405852.5:72 uc061oyb.1:72 ENST00000483622.1:92 uc061oyc.1:92 ENST00000456358.5:361 uc061oyd.1:361 | ||
|chr=chr2 | |chr=chr2 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-87 | |distance_to_tss=-87 | ||
|end=161160365 | |end=161160365 | ||
| + | |end_of_center_position=161160341 | ||
|entrez_id=10010 | |entrez_id=10010 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=I-TRAF | + | |gene_alias=I-TRAF |
|gene_description=TRAF family member associated NFKB activator | |gene_description=TRAF family member associated NFKB activator | ||
|gene_id=10010 | |gene_id=10010 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=161160316 | |start=161160316 | ||
| + | |start_of_center_position=161160340 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000461338.5 ENST00000429217.5 ENST00000406287.5 ENST00000402568.5 uc061oxs.1 uc061oxt.1 uc061oxu.1 uc061oxv.1 | |transcript_name=ENST00000461338.5 ENST00000429217.5 ENST00000406287.5 ENST00000402568.5 uc061oxs.1 uc061oxt.1 uc061oxu.1 uc061oxv.1 | ||
Revision as of 20:41, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161160340 |
|---|---|
| End of the center position in the TSS region: | 161160341 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000461338.5 ENST00000429217.5 ENST00000406287.5 ENST00000402568.5 uc061oxs.1 uc061oxt.1 uc061oxu.1 uc061oxv.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000461338.5:0 ENST00000429217.5:0 ENST00000406287.5:0 ENST00000402568.5:0 uc061oxs.1:0 uc061oxt.1:0 uc061oxu.1:0 uc061oxv.1:0 ENST00000440506.5:-18 uc061oxr.1:-18 ENST00000392749.6:-20 uc002ubs.4:-20 ENST00000457887.5:41 uc061oxw.1:41 ENST00000477952.1:62 uc061oxx.1:62 ENST00000441987.5:63 ENST00000432692.6:63 NM_001199135:63 uc061oxy.1:63 uc061oxz.1:63 AK313096:63 ENST00000494976.1:67 uc061oya.1:67 BC067779:71 ENST00000405852.5:72 uc061oyb.1:72 ENST00000483622.1:92 uc061oyc.1:92 ENST00000456358.5:361 uc061oyd.1:361 |
TATA-Box annotation
| Distance to TSS: | -87 |
|---|---|
| Nearest PromoterID: | NM_001199135 |
| Entrez ID: | 10010 |
| Nearest Unigene: | Hs.132257 |
| Nearest Refseq: | NM_004180 |
| Nearest Ensembl: | ENSG00000136560 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | I-TRAF |
| Gene Description: | TRAF family member associated NFKB activator |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
