Difference between revisions of "TSS:Mm 101200.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |Evi8= | ||
|all_trans=U33629:-180 U33630:-180 AB221660:200 ENSMUST00000102878.10:-228 ENSMUST00000177417.7:-228 AK132298:-263 ENSMUST00000125722.7:-436 ENSMUST00000137300.1:-436 AK049720:-436 AK032947:-436 ENSMUST00000068264.13:-472 BC023689:-472 AK168684:-475 AK134321:-480 ENSMUST00000185131.7:-483 NM_001193271:-483 NM_010789:-483 uc007icm.2:-483 uc007icl.2:-483 uc007icn.2:-483 uc007ico.2:-483 AK140748:-483 ENSMUST00000144988.7:-499 | |all_trans=U33629:-180 U33630:-180 AB221660:200 ENSMUST00000102878.10:-228 ENSMUST00000177417.7:-228 AK132298:-263 ENSMUST00000125722.7:-436 ENSMUST00000137300.1:-436 AK049720:-436 AK032947:-436 ENSMUST00000068264.13:-472 BC023689:-472 AK168684:-475 AK134321:-480 ENSMUST00000185131.7:-483 NM_001193271:-483 NM_010789:-483 uc007icm.2:-483 uc007icl.2:-483 uc007icn.2:-483 uc007ico.2:-483 AK140748:-483 ENSMUST00000144988.7:-499 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=510 | |distance_to_tss=510 | ||
|end=19018486 | |end=19018486 | ||
| + | |end_of_center_position=19018459 | ||
|entrez_id=17268 | |entrez_id=17268 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=C530044H18Rik | + | |gene_alias=C530044H18Rik |
|gene_description=Meis homeobox 1 | |gene_description=Meis homeobox 1 | ||
|gene_id=17268 | |gene_id=17268 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=19018431 | |start=19018431 | ||
| + | |start_of_center_position=19018458 | ||
|strand=- | |strand=- | ||
|tata_box="10(GCTTTTATGCTC,+,0.00)" | |tata_box="10(GCTTTTATGCTC,+,0.00)" | ||
Revision as of 21:48, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 19018458 |
|---|---|
| End of the center position in the TSS region: | 19018459 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | U33629 U33630 |
|---|---|
| Distance: | -180 |
| Num_trans: | 23 |
| All_trans: | U33629:-180 U33630:-180 AB221660:200 ENSMUST00000102878.10:-228 ENSMUST00000177417.7:-228 AK132298:-263 ENSMUST00000125722.7:-436 ENSMUST00000137300.1:-436 AK049720:-436 AK032947:-436 ENSMUST00000068264.13:-472 BC023689:-472 AK168684:-475 AK134321:-480 ENSMUST00000185131.7:-483 NM_001193271:-483 NM_010789:-483 uc007icm.2:-483 uc007icl.2:-483 uc007icn.2:-483 uc007ico.2:-483 AK140748:-483 ENSMUST00000144988.7:-499 |
TATA-Box annotation
| Distance to TSS: | 510 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis homeobox 1 |
| Gene Alias: | C530044H18Rik |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "10(GCTTTTATGCTC,+,0.00)" |
