Difference between revisions of "TSS:Mm 101805.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000093166.10:0 AK147971:0 AF334144:0 AK030397:0 BC056974:0 AK018280:6 AK147586:-12 ENSMUST00000165599.8:-20 NM_001252460:-20 NM_133769:-20 uc00...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |6430511D02Rik= | ||
| + | |AA930218= | ||
| + | |AU022376= | ||
| + | |Pir121= | ||
|all_trans=ENSMUST00000093166.10:0 AK147971:0 AF334144:0 AK030397:0 BC056974:0 AK018280:6 AK147586:-12 ENSMUST00000165599.8:-20 NM_001252460:-20 NM_133769:-20 uc007ioc.2:-20 uc007iob.2:-20 ENSMUST00000129474.1:64 AK147632:285 | |all_trans=ENSMUST00000093166.10:0 AK147971:0 AF334144:0 AK030397:0 BC056974:0 AK018280:6 AK147586:-12 ENSMUST00000165599.8:-20 NM_001252460:-20 NM_133769:-20 uc007ioc.2:-20 uc007iob.2:-20 ENSMUST00000129474.1:64 AK147632:285 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=47 | |distance_to_tss=47 | ||
|end=46312338 | |end=46312338 | ||
| + | |end_of_center_position=46312311 | ||
|entrez_id=76884 | |entrez_id=76884 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=1500004I01Rik | + | |gene_alias=1500004I01Rik |
|gene_description=cytoplasmic FMR1 interacting protein 2 | |gene_description=cytoplasmic FMR1 interacting protein 2 | ||
|gene_id=76884 | |gene_id=76884 | ||
| Line 17: | Line 22: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1924134 | |hgnc_mgi_id=MGI:1924134 | ||
| + | |mKIAA1168= | ||
|nearest_ensembl=ENSMUSG00000020340 | |nearest_ensembl=ENSMUSG00000020340 | ||
|nearest_promoter_id=NM_001252460 | |nearest_promoter_id=NM_001252460 | ||
| Line 24: | Line 30: | ||
|species=mouse | |species=mouse | ||
|start=46312283 | |start=46312283 | ||
| + | |start_of_center_position=46312310 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000093166.10 AK147971 AF334144 AK030397 BC056974 | |transcript_name=ENSMUST00000093166.10 AK147971 AF334144 AK030397 BC056974 | ||
Revision as of 23:46, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46312310 |
|---|---|
| End of the center position in the TSS region: | 46312311 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000093166.10 AK147971 AF334144 AK030397 BC056974 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000093166.10:0 AK147971:0 AF334144:0 AK030397:0 BC056974:0 AK018280:6 AK147586:-12 ENSMUST00000165599.8:-20 NM_001252460:-20 NM_133769:-20 uc007ioc.2:-20 uc007iob.2:-20 ENSMUST00000129474.1:64 AK147632:285 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_001252460 |
| Entrez ID: | 76884 |
| Nearest Unigene: | Mm.154358 |
| Nearest Refseq: | NM_133769 |
| Nearest Ensembl: | ENSMUSG00000020340 |
| Gene Name: | cytoplasmic FMR1 interacting protein 2 |
| Gene Alias: | 1500004I01Rik |
| Gene Description: | cytoplasmic FMR1 interacting protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
