Difference between revisions of "TSS:Hg 103939.1"
From referenceTSS
| Line 12: | Line 12: | ||
|distance_to_tss=159 | |distance_to_tss=159 | ||
|end=13100246 | |end=13100246 | ||
| + | |end_of_center_position=13100241 | ||
|entrez_id=10133 | |entrez_id=10133 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=ALS12 | + | |gene_alias=ALS12 |
|gene_description=optineurin | |gene_description=optineurin | ||
|gene_id=10133 | |gene_id=10133 | ||
| Line 30: | Line 31: | ||
|species=human | |species=human | ||
|start=13100235 | |start=13100235 | ||
| + | |start_of_center_position=13100240 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000378747.7 uc001ilv.2 AF420371 AF420372 AF420373 | |transcript_name=ENST00000378747.7 uc001ilv.2 AF420371 AF420372 AF420373 | ||
Revision as of 23:54, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 13100240 |
|---|---|
| End of the center position in the TSS region: | 13100241 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378747.7 uc001ilv.2 AF420371 AF420372 AF420373 |
|---|---|
| Distance: | -11 |
| Num_trans: | 26 |
| All_trans: | ENST00000378747.7:-11 uc001ilv.2:-11 AF420371:-11 AF420372:-11 AF420373:-11 AF061034:-26 ENST00000430081.5:-63 ENST00000378752.7:-63 ENST00000378748.7:-63 uc057rtj.1:-63 uc001ilw.2:-63 uc001ily.2:-63 BC032762:-63 ENST00000378757.6:-67 uc001ilx.2:-67 BC013876:-67 ENST00000482140.5:-73 uc057rti.1:-73 ENST00000487935.1:-77 uc057rth.1:-77 AK303715:-78 AK316171:-100 NM_021980:-154 NM_001008213:-154 NM_001008212:-154 NM_001008211:-154 |
TATA-Box annotation
| Distance to TSS: | 159 |
|---|---|
| Nearest PromoterID: | NM_001008211 |
| Entrez ID: | 10133 |
| Nearest Unigene: | Hs.332706 |
| Nearest Refseq: | NM_021980 |
| Nearest Ensembl: | ENSG00000123240 |
| Gene Name: | optineurin |
| Gene Alias: | ALS12 |
| Gene Description: | optineurin |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
