Difference between revisions of "TSS:Hg 232216.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AB463998:60 BC172252:60 BC172557:60 NM_178161:61 ENST00000376504.3:-143 uc001irp.4:-143 |chr=chr10 |cpg_percent=0.1 |distance=60 |distance_to_tss=-61 |e...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PAGEN2= | ||
| + | |PTF1-p48= | ||
|all_trans=AB463998:60 BC172252:60 BC172557:60 NM_178161:61 ENST00000376504.3:-143 uc001irp.4:-143 | |all_trans=AB463998:60 BC172252:60 BC172557:60 NM_178161:61 ENST00000376504.3:-143 uc001irp.4:-143 | ||
| + | |bHLHa29= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=-61 | |distance_to_tss=-61 | ||
|end=23192470 | |end=23192470 | ||
| + | |end_of_center_position=23868086 | ||
|entrez_id=256297 | |entrez_id=256297 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=PACA | + | |gene_alias=PACA |
|gene_description="pancreas specific transcription factor, 1a" | |gene_description="pancreas specific transcription factor, 1a" | ||
|gene_id=256297 | |gene_id=256297 | ||
| Line 24: | Line 28: | ||
|species=human | |species=human | ||
|start=23192469 | |start=23192469 | ||
| + | |start_of_center_position=23868085 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AB463998 BC172252 BC172557 | |transcript_name=AB463998 BC172252 BC172557 | ||
Revision as of 01:09, 12 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 23868085 |
|---|---|
| End of the center position in the TSS region: | 23868086 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB463998 BC172252 BC172557 |
|---|---|
| Distance: | 60 |
| Num_trans: | 6 |
| All_trans: | AB463998:60 BC172252:60 BC172557:60 NM_178161:61 ENST00000376504.3:-143 uc001irp.4:-143 |
TATA-Box annotation
| Distance to TSS: | -61 |
|---|---|
| Nearest PromoterID: | NM_178161 |
| Entrez ID: | 256297 |
| Nearest Unigene: | Hs.351503 |
| Nearest Refseq: | NM_178161 |
| Nearest Ensembl: | ENSG00000168267 |
| Gene Name: | "pancreas specific transcription factor, 1a" |
| Gene Alias: | PACA |
| Gene Description: | "pancreas specific transcription factor, 1a" |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
