Difference between revisions of "TSS:Hg 105813.1"
From referenceTSS
| Line 15: | Line 15: | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
|end=79610944 | |end=79610944 | ||
| + | |end_of_center_position=79610939 | ||
|entrez_id=653509 | |entrez_id=653509 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=COLEC4 | + | |gene_alias=COLEC4 |
|gene_description=surfactant protein A1 | |gene_description=surfactant protein A1 | ||
|gene_id=653509 | |gene_id=653509 | ||
| Line 33: | Line 34: | ||
|species=human | |species=human | ||
|start=79610933 | |start=79610933 | ||
| + | |start_of_center_position=79610938 | ||
|strand=+ | |strand=+ | ||
|tata_box="-31(ATCTATAAATGC,-,0.00)" | |tata_box="-31(ATCTATAAATGC,-,0.00)" | ||
Revision as of 05:50, 12 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 79610938 |
|---|---|
| End of the center position in the TSS region: | 79610939 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000398636.7 ENST00000428376.6 NM_005411 NM_001164646 NM_001093770 NM_001164645 NM_001164644 NM_001164647 uc001kap.4 uc001kar.4 AK290703 AK298002 AK298034 AK298029 AK316196 HQ021433 HQ021434 HQ021435 HQ021436 HQ021437 HQ021438 HQ021439 HQ021440 HQ021441 HQ021442 JX502764 JX502765 AK298092 S69687 S69688 S69690 AK309518 |
|---|---|
| Distance: | 0 |
| Num_trans: | 44 |
| All_trans: | ENST00000398636.7:0 ENST00000428376.6:0 NM_005411:0 NM_001164646:0 NM_001093770:0 NM_001164645:0 NM_001164644:0 NM_001164647:0 uc001kap.4:0 uc001kar.4:0 AK290703:0 AK298002:0 AK298034:0 AK298029:0 AK316196:0 HQ021433:0 HQ021434:0 HQ021435:0 HQ021436:0 HQ021437:0 HQ021438:0 HQ021439:0 HQ021440:0 HQ021441:0 HQ021442:0 JX502764:0 JX502765:0 AK298092:0 S69687:0 S69688:0 S69690:0 AK309518:0 ENST00000419470.6:1 uc009xry.4:1 BC026229:1 M13686:7 ENST00000429958.5:9 uc057ulj.1:9 ENST00000439264.1:11 uc057ulk.1:11 BC111570:16 ENST00000486922.1:17 uc057ull.1:17 BC029913:375 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001164647 |
| Entrez ID: | 653509 |
| Nearest Unigene: | Hs.535295 |
| Nearest Refseq: | NM_005411 |
| Nearest Ensembl: | ENSG00000122852 |
| Gene Name: | surfactant protein A1 |
| Gene Alias: | COLEC4 |
| Gene Description: | surfactant protein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(ATCTATAAATGC,-,0.00)" |
