Difference between revisions of "TSS:Mm 99561.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000154471.7:384 ENSMUST00000129780.1:384 NR_102388:384 NR_102389:384 NR_102396:384 uc033gau.1:384 uc007lvp.1:384 uc033gav.1:384 AK165205:384 AK...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C76855= | ||
| + | |Gs27= | ||
| + | |SNARE= | ||
|all_trans=ENSMUST00000154471.7:384 ENSMUST00000129780.1:384 NR_102388:384 NR_102389:384 NR_102396:384 uc033gau.1:384 uc007lvp.1:384 uc033gav.1:384 AK165205:384 AK142001:390 | |all_trans=ENSMUST00000154471.7:384 ENSMUST00000129780.1:384 NR_102388:384 NR_102389:384 NR_102396:384 uc033gau.1:384 uc007lvp.1:384 uc033gav.1:384 AK165205:384 AK142001:390 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=379 | |distance_to_tss=379 | ||
|end=103697340 | |end=103697340 | ||
| + | |end_of_center_position=103697331 | ||
|entrez_id=56494 | |entrez_id=56494 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=2310032N09Rik | + | |gene_alias=2310032N09Rik |
|gene_description=golgi SNAP receptor complex member 2 | |gene_description=golgi SNAP receptor complex member 2 | ||
|gene_id=399609 | |gene_id=399609 | ||
| Line 17: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3026935 | |hgnc_mgi_id=MGI:3026935 | ||
| + | |membrin= | ||
|nearest_ensembl=ENSMUSG00000020946 | |nearest_ensembl=ENSMUSG00000020946 | ||
|nearest_promoter_id=NM_019650 | |nearest_promoter_id=NM_019650 | ||
| Line 24: | Line 29: | ||
|species=mouse | |species=mouse | ||
|start=103697321 | |start=103697321 | ||
| + | |start_of_center_position=103697330 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000154471.7 ENSMUST00000129780.1 NR_102388 NR_102389 NR_102396 uc033gau.1 uc007lvp.1 uc033gav.1 AK165205 | |transcript_name=ENSMUST00000154471.7 ENSMUST00000129780.1 NR_102388 NR_102389 NR_102396 uc033gau.1 uc007lvp.1 uc033gav.1 AK165205 | ||
Revision as of 10:36, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 103697330 |
|---|---|
| End of the center position in the TSS region: | 103697331 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000154471.7 ENSMUST00000129780.1 NR_102388 NR_102389 NR_102396 uc033gau.1 uc007lvp.1 uc033gav.1 AK165205 |
|---|---|
| Distance: | 384 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000154471.7:384 ENSMUST00000129780.1:384 NR_102388:384 NR_102389:384 NR_102396:384 uc033gau.1:384 uc007lvp.1:384 uc033gav.1:384 AK165205:384 AK142001:390 |
TATA-Box annotation
| Distance to TSS: | 379 |
|---|---|
| Nearest PromoterID: | NM_019650 |
| Entrez ID: | 56494 |
| Nearest Unigene: | Mm.195451 |
| Nearest Refseq: | NM_019650 |
| Nearest Ensembl: | ENSMUSG00000020946 |
| Gene Name: | RIKEN cDNA C130046K22 gene |
| Gene Alias: | 2310032N09Rik |
| Gene Description: | golgi SNAP receptor complex member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
