Difference between revisions of "TSS:Mm 50620.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=uc009bww.1:0 AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 ENSMUST00000171601.7:-488 |chr=chr6 |cpg_percent=0.075 |distance=0 |distance_to_tss=669 |end...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Pals2= | ||
|all_trans=uc009bww.1:0 AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 ENSMUST00000171601.7:-488 | |all_trans=uc009bww.1:0 AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 ENSMUST00000171601.7:-488 | ||
|chr=chr6 | |chr=chr6 | ||
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|distance_to_tss=669 | |distance_to_tss=669 | ||
|end=50110926 | |end=50110926 | ||
| + | |end_of_center_position=50110911 | ||
|entrez_id=56524 | |entrez_id=56524 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=P55t | + | |gene_alias=P55t |
|gene_description="membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)" | |gene_description="membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)" | ||
|gene_id=56524 | |gene_id=56524 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=50110894 | |start=50110894 | ||
| + | |start_of_center_position=50110910 | ||
|strand=+ | |strand=+ | ||
|transcript_name=uc009bww.1 AK170481 AK164549 | |transcript_name=uc009bww.1 AK170481 AK164549 | ||
Revision as of 10:55, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 50110910 |
|---|---|
| End of the center position in the TSS region: | 50110911 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | uc009bww.1 AK170481 AK164549 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | uc009bww.1:0 AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 ENSMUST00000171601.7:-488 |
TATA-Box annotation
| Distance to TSS: | 669 |
|---|---|
| Nearest PromoterID: | NM_001164733 |
| Entrez ID: | 56524 |
| Nearest Unigene: | Mm.41288 |
| Nearest Refseq: | NM_008016 |
| Nearest Ensembl: | ENSMUSG00000038388 |
| Gene Name: | "membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)" |
| Gene Alias: | P55t |
| Gene Description: | "membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)" |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
