Difference between revisions of "TSS:Mm 99895.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000123354.7:0 ENSMUST00000106677.7:0 NM_001313974:0 NM_001313973:0 uc029rpk.1:0 uc029rpl.1:0 HQ412666:0 HQ412667:0 |chr=chr11 |cpg_percent=0.02...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RIalpha= | ||
| + | |Tse-1= | ||
| + | |Tse1= | ||
|all_trans=ENSMUST00000123354.7:0 ENSMUST00000106677.7:0 NM_001313974:0 NM_001313973:0 uc029rpk.1:0 uc029rpl.1:0 HQ412666:0 HQ412667:0 | |all_trans=ENSMUST00000123354.7:0 ENSMUST00000106677.7:0 NM_001313974:0 NM_001313973:0 uc029rpk.1:0 uc029rpl.1:0 HQ412666:0 HQ412667:0 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=2 | |distance_to_tss=2 | ||
|end=109649437 | |end=109649437 | ||
| + | |end_of_center_position=109649407 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik |
|gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | |gene_description="protein kinase, cAMP dependent regulatory, type I, alpha" | ||
|gene_id=19084 | |gene_id=19084 | ||
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|species=mouse | |species=mouse | ||
|start=109649376 | |start=109649376 | ||
| + | |start_of_center_position=109649406 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000123354.7 ENSMUST00000106677.7 NM_001313974 NM_001313973 uc029rpk.1 uc029rpl.1 HQ412666 HQ412667 | |transcript_name=ENSMUST00000123354.7 ENSMUST00000106677.7 NM_001313974 NM_001313973 uc029rpk.1 uc029rpl.1 HQ412666 HQ412667 | ||
Revision as of 11:30, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 109649406 |
|---|---|
| End of the center position in the TSS region: | 109649407 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000123354.7 ENSMUST00000106677.7 NM_001313974 NM_001313973 uc029rpk.1 uc029rpl.1 HQ412666 HQ412667 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENSMUST00000123354.7:0 ENSMUST00000106677.7:0 NM_001313974:0 NM_001313973:0 uc029rpk.1:0 uc029rpl.1:0 HQ412666:0 HQ412667:0 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001313974 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Alias: | 1300018C22Rik |
| Gene Description: | "protein kinase, cAMP dependent regulatory, type I, alpha" |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
