Difference between revisions of "TSS:Mm 163280.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |Sk1= | ||
| + | |Spk1= | ||
|all_trans=ENSMUST00000063446.12:-26 AK155332:-39 ENSMUST00000155102.7:-42 AK160900:-44 ENSMUST00000145737.7:-45 ENSMUST00000134834.7:-48 AK028667:-48 ENSMUST00000106386.7:-55 NM_001172473:-55 NM_001172472:-55 uc007mlh.2:-55 uc007mli.2:-55 AK216506:-362 ENSMUST00000063396.9:424 | |all_trans=ENSMUST00000063446.12:-26 AK155332:-39 ENSMUST00000155102.7:-42 AK160900:-44 ENSMUST00000145737.7:-45 ENSMUST00000134834.7:-48 AK028667:-48 ENSMUST00000106386.7:-55 NM_001172473:-55 NM_001172472:-55 uc007mlh.2:-55 uc007mli.2:-55 AK216506:-362 ENSMUST00000063396.9:424 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=56 | |distance_to_tss=56 | ||
|end=116532501 | |end=116532501 | ||
| + | |end_of_center_position=116532500 | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=116532498 | |start=116532498 | ||
| + | |start_of_center_position=116532499 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000063446.12 | |transcript_name=ENSMUST00000063446.12 | ||
Revision as of 12:21, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 116532499 |
|---|---|
| End of the center position in the TSS region: | 116532500 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000063446.12 |
|---|---|
| Distance: | -26 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000063446.12:-26 AK155332:-39 ENSMUST00000155102.7:-42 AK160900:-44 ENSMUST00000145737.7:-45 ENSMUST00000134834.7:-48 AK028667:-48 ENSMUST00000106386.7:-55 NM_001172473:-55 NM_001172472:-55 uc007mlh.2:-55 uc007mli.2:-55 AK216506:-362 ENSMUST00000063396.9:424 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_001172473 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
