Personal tools

Difference between revisions of "Template:PeakPage"

From referenceTSS

Jump to: navigation, search
m
m
Line 46: Line 46:
 
<span class="section_head">TATA-Box annotation</span>
 
<span class="section_head">TATA-Box annotation</span>
 
<hr width="200px" size="2" noshade>
 
<hr width="200px" size="2" noshade>
<table style="width: 600px;table-layout:fixed;">
+
<table class="inner" style="width: 600px;table-layout:fixed;">
 
<tr><th scope="row" class="item_label_long">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
 
<tr><th scope="row" class="item_label_long">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
Line 66: Line 66:
 
<span class="section_head">Transcript annotation</span>
 
<span class="section_head">Transcript annotation</span>
 
<hr width="200px" size="2" noshade>
 
<hr width="200px" size="2" noshade>
<table border="0" >
+
<table class="inner" border="0" >
 
<tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr>
 
<tr><th scope="row" align="left">Transcript_name:</th><td>[[transcript_name::{{{transcript_name}}}]]</td></tr>
 
<tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr>
 
<tr><th scope="row" align="left">Distance:</th><td>[[distance::{{{distance}}}]]</td></tr>
Line 98: Line 98:
 
<span class="section_head">TSS classification</span>
 
<span class="section_head">TSS classification</span>
 
<hr width="170px" size="2" noshade>
 
<hr width="170px" size="2" noshade>
<table border="0" >
+
<table border="0" class="inner">
 
<tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr>
 
<tr><th scope="row" align="left">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr>
 
<tr><th scope="row" align="left">Start:</th><td>[[start::{{{start}}}]]</td></tr>
 
<tr><th scope="row" align="left">Start:</th><td>[[start::{{{start}}}]]</td></tr>

Revision as of 17:56, 7 February 2018



Basic information about the peak


PeakID:{{{peak_id}}}
Species:{{{species}}}
Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}



TATA-Box annotation


Peak Score:{{{peak_score}}}
Distance to TSS:{{{distance_to_tss}}}
Nearest PromoterID:{{{nearest_promoter_id}}}
Entrez ID:{{{entrez_id}}}
Nearest Unigene:{{{nearest_unigene}}}
Nearest Refseq:{{{nearest_refseq}}}
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:{{{gene_name}}}
Gene Alias:{{{gene_alias}}}
Gene Description:{{{gene_description}}}
Gene Type:{{{gene_type}}}
CpG%:{{{cpg_percent}}}
GC%:{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):{{{tata_box}}}



Transcript annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
Num_trans:{{{num_trans}}}
All_trans:{{{all_trans}}}



Gene and protein annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
GeneID:{{{gene_id}}}
HGNC/MGI_ID:{{{hgnc_mgi_id}}}
UniProt_ID:{{{uniprot_id}}}
Gene_name:{{{gene_name}}}
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:{{{gene_synonyms}}}
Gene_source:{{{gene_source}}}



TSS classification


Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}