Personal tools

Difference between revisions of "Template:PeakPage"

From referenceTSS

Jump to: navigation, search
m
m
Line 14: Line 14:
 
font-style:;
 
font-style:;
 
}
 
}
 +
 
.item_label {
 
.item_label {
 
     text-align:left;
 
     text-align:left;

Revision as of 18:34, 7 February 2018



Basic information about the peak


PeakID:{{{peak_id}}}
Species:{{{species}}}
Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}



TATA-Box annotation


Peak Score:{{{peak_score}}}
Distance to TSS:{{{distance_to_tss}}}
Nearest PromoterID:{{{nearest_promoter_id}}}
Entrez ID:{{{entrez_id}}}
Nearest Unigene:{{{nearest_unigene}}}
Nearest Refseq:{{{nearest_refseq}}}
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:{{{gene_name}}}
Gene Alias:{{{gene_alias}}}
Gene Description:{{{gene_description}}}
Gene Type:{{{gene_type}}}
CpG%:{{{cpg_percent}}}
GC%:{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):{{{tata_box}}}



Transcript annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
Num_trans:{{{num_trans}}}
All_trans:{{{all_trans}}}



Gene and protein annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
GeneID:{{{gene_id}}}
HGNC/MGI_ID:{{{hgnc_mgi_id}}}
UniProt_ID:{{{uniprot_id}}}
Gene_name:{{{gene_name}}}
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:{{{gene_synonyms}}}
Gene_source:{{{gene_source}}}



TSS classification


Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}