Difference between revisions of "TSS:Hg 53380.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001135147:13 ENST00000424970.6:61 uc011ceo.2:61 AK304274:61 NM_022154:75 ENST00000394833.6:127 uc003hwb.2:127 AB040120:127 ENST00000514000.5:-164 uc0...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CDG2N= | ||
| + | |LZT-Hs6= | ||
| + | |PP3105= | ||
| + | |ZIP8= | ||
|all_trans=NM_001135147:13 ENST00000424970.6:61 uc011ceo.2:61 AK304274:61 NM_022154:75 ENST00000394833.6:127 uc003hwb.2:127 AB040120:127 ENST00000514000.5:-164 uc062yoa.1:-164 AF193052:-176 ENST00000356736.4:-201 uc003hwc.3:-201 BC012125:-201 ENST00000512657.5:-209 uc062yob.1:-209 NM_001135146:-225 | |all_trans=NM_001135147:13 ENST00000424970.6:61 uc011ceo.2:61 AK304274:61 NM_022154:75 ENST00000394833.6:127 uc003hwb.2:127 AB040120:127 ENST00000514000.5:-164 uc062yoa.1:-164 AF193052:-176 ENST00000356736.4:-201 uc003hwc.3:-201 BC012125:-201 ENST00000512657.5:-209 uc062yob.1:-209 NM_001135146:-225 | ||
|chr=chr4 | |chr=chr4 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=-16 | |distance_to_tss=-16 | ||
|end=102345273 | |end=102345273 | ||
| + | |end_of_center_position=102345270 | ||
|entrez_id=64116 | |entrez_id=64116 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=BIGM103 | + | |gene_alias=BIGM103 |
|gene_description=solute carrier family 39 member 8 | |gene_description=solute carrier family 39 member 8 | ||
|gene_id=64116 | |gene_id=64116 | ||
| Line 24: | Line 29: | ||
|species=human | |species=human | ||
|start=102345265 | |start=102345265 | ||
| + | |start_of_center_position=102345269 | ||
|strand=- | |strand=- | ||
|tata_box="-7(CCCTTTAAACGC,+,0.00)" | |tata_box="-7(CCCTTTAAACGC,+,0.00)" | ||
Revision as of 20:45, 13 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102345269 |
|---|---|
| End of the center position in the TSS region: | 102345270 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001135147 |
|---|---|
| Distance: | 13 |
| Num_trans: | 17 |
| All_trans: | NM_001135147:13 ENST00000424970.6:61 uc011ceo.2:61 AK304274:61 NM_022154:75 ENST00000394833.6:127 uc003hwb.2:127 AB040120:127 ENST00000514000.5:-164 uc062yoa.1:-164 AF193052:-176 ENST00000356736.4:-201 uc003hwc.3:-201 BC012125:-201 ENST00000512657.5:-209 uc062yob.1:-209 NM_001135146:-225 |
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_001135147 |
| Entrez ID: | 64116 |
| Nearest Unigene: | Hs.288034 |
| Nearest Refseq: | NM_022154 |
| Nearest Ensembl: | ENSG00000138821 |
| Gene Name: | solute carrier family 39 member 8 |
| Gene Alias: | BIGM103 |
| Gene Description: | solute carrier family 39 member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-7(CCCTTTAAACGC,+,0.00)" |
