Difference between revisions of "TSS:Hg 145189.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC016743:21 EU668327:21 ENST00000619151.4:-23 NM_001519:-23 NM_001242788:-23 NM_001242790:-23 uc059fzf.1:-23 U28838:-23 ENST00000379937.6:234 uc010axg.2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BRF-1= | ||
| + | |CFDS= | ||
| + | |GTF3B= | ||
| + | |HEL-S-76p= | ||
| + | |TAF3B2= | ||
| + | |TAF3C= | ||
| + | |TAFIII90= | ||
| + | |TF3B90= | ||
| + | |TFIIIB90= | ||
|all_trans=BC016743:21 EU668327:21 ENST00000619151.4:-23 NM_001519:-23 NM_001242788:-23 NM_001242790:-23 uc059fzf.1:-23 U28838:-23 ENST00000379937.6:234 uc010axg.2:234 BC086856:234 ENST00000547530.6:271 U75276:271 ENST00000548421.2:-309 uc001yqr.4:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491 uc059fzm.1:491 | |all_trans=BC016743:21 EU668327:21 ENST00000619151.4:-23 NM_001519:-23 NM_001242788:-23 NM_001242790:-23 uc059fzf.1:-23 U28838:-23 ENST00000379937.6:234 uc010axg.2:234 BC086856:234 ENST00000547530.6:271 U75276:271 ENST00000548421.2:-309 uc001yqr.4:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491 uc059fzm.1:491 | ||
|chr=chr14 | |chr=chr14 | ||
| Line 6: | Line 15: | ||
|distance_to_tss=28 | |distance_to_tss=28 | ||
|end=105300969 | |end=105300969 | ||
| + | |end_of_center_position=105300964 | ||
|entrez_id=2972 | |entrez_id=2972 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=BRF | + | |gene_alias=BRF |
|gene_description="BRF1, RNA polymerase III transcription initiation factor subunit" | |gene_description="BRF1, RNA polymerase III transcription initiation factor subunit" | ||
|gene_id=2972 | |gene_id=2972 | ||
| Line 16: | Line 26: | ||
|gene_synonyms=BRF TFIIIB90 hBRF | |gene_synonyms=BRF TFIIIB90 hBRF | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hBRF= | ||
|hgnc_mgi_id=HGNC:11551 | |hgnc_mgi_id=HGNC:11551 | ||
|nearest_ensembl=ENSG00000185024 | |nearest_ensembl=ENSG00000185024 | ||
| Line 24: | Line 35: | ||
|species=human | |species=human | ||
|start=105300958 | |start=105300958 | ||
| + | |start_of_center_position=105300963 | ||
|strand=- | |strand=- | ||
|transcript_name=BC016743 EU668327 | |transcript_name=BC016743 EU668327 | ||
Revision as of 06:42, 14 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105300963 |
|---|---|
| End of the center position in the TSS region: | 105300964 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC016743 EU668327 |
|---|---|
| Distance: | 21 |
| Num_trans: | 20 |
| All_trans: | BC016743:21 EU668327:21 ENST00000619151.4:-23 NM_001519:-23 NM_001242788:-23 NM_001242790:-23 uc059fzf.1:-23 U28838:-23 ENST00000379937.6:234 uc010axg.2:234 BC086856:234 ENST00000547530.6:271 U75276:271 ENST00000548421.2:-309 uc001yqr.4:-309 CU677703:327 AB527272:329 AJ297408:388 ENST00000546417.5:491 uc059fzm.1:491 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001242790 |
| Entrez ID: | 2972 |
| Nearest Unigene: | Hs.424484 |
| Nearest Refseq: | NM_001519 |
| Nearest Ensembl: | ENSG00000185024 |
| Gene Name: | "BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit" |
| Gene Alias: | BRF |
| Gene Description: | "BRF1, RNA polymerase III transcription initiation factor subunit" |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
