Personal tools

TSS:Mm 100123.1

From referenceTSS

Revision as of 12:07, 12 May 2019 by Autoedit (talk | contribs)
Jump to: navigation, search

Basic information about the TSS


TSS ID:mm_100123.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:115900125
End:115900190
Strand:+
TSS Score:1
Start of the center position in the TSS region:115900157
End of the center position in the TSS region:115900158



Gene and protein annotation


Transcript_name:ENSMUST00000142089.1 NM_183259 uc007mja.2 uc007mjb.2 AK020450
Distance:0
GeneID:66528
HGNC/MGI_ID:MGI:1913778
UniProt_ID:Q8BT42
Gene_name:small integral membrane protein 5
Gene_symbol:Smim5
Gene_synonyms:2210020M01Rik
Gene_source:MGI:1913778



Transcript annotation


Transcript_name:ENSMUST00000142089.1 NM_183259 uc007mja.2 uc007mjb.2 AK020450
Distance:0
Num_trans:10
All_trans:ENSMUST00000142089.1:0 NM_183259:0 uc007mja.2:0 uc007mjb.2:0 AK020450:0 ENSMUST00000131566.1:12 AK004370:16 BC065414:118 ENSMUST00000152171.7:-160 BC032884:-160



TATA-Box annotation


Distance to TSS:19
Nearest PromoterID:NM_183259
Entrez ID:66528
Nearest Unigene:Mm.275740
Nearest Refseq:NM_183259
Nearest Ensembl:ENSMUSG00000048442
Gene Name:small integral membrane protein 5
Gene Alias:2210020M01Rik
Gene Description:small integral membrane protein 5
Gene Type:protein-coding
CpG%:0.03
GC%:0.567164
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):