rfhg_101315.1
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -28808 |
|---|---|
| Nearest PromoterID: | NM_002769 |
| Entrez ID: | 5644 |
| Nearest Unigene: | Hs.382212 |
| Nearest Refseq: | NM_002769 |
| Nearest Ensembl: | ENSG00000204983 |
| Gene Name: | T cell receptor beta variable 28 |
| Gene Alias: | TRP1|TRY1|TRY4|TRYP1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "AB305946:1 AB978187:-3 AB305805:4 AF043183:4 EU427375:4 KT955850:4 AB305875:6 M27382:7 AB305907:12 AB978253:12 AB977525:14 AB977795:27 AB977734:-81 AB977610:-151 AB977617:-177 AB977913:188 M13843:188 X04929:188 AB305812:188 M18462:188 JN019786:198 AB305851:204 AB305996:220 AB306157:223 AB305872:238 AB978250:255 AB977521:261 AB977972:264 AB978026:264 AB977710:281 AB977839:289 AB978261:289 AB305874:293 KX074240:301 KX075406:303 KX074625:303 KX075835:303 KX076789:303 KX075801:303 KX076815:303 JF923743:303 KX074278:304 KX074572:304 KX076748:305 KX076809:305 KX076550:305 KX075431:306 KX076502:306 KX074251:306 KX075427:306 S48146:306 KX075703:307 KX075909:309 KX076978:309 KX075966:309 KX074466:309 KX074663:310 AY123167:318 AY123168:318 AY123169:318 AY123170:318 AB977794:318 AB977615:319 AB977616:319 AB977649:319 AB977594:320 AB977717:320 AB977941:320 AB977644:320 AB977869:320 AB977666:321 AB305903:323 Z23041:333 KX077115:341 KX075024:343 KX075940:346 KX074714:348 KX076954:348 KX076284:351 KX076709:354 KX075457:361 M13844:361 KX076732:362 JF731197:363 M13845:369 KX075811:371 KX074421:377 KX075043:377 KX075036:377 KX074715:378 KX075757:378 KX075289:378 KX074717:378 KX075800:378 KX077157:378 KX075107:379 KX077006:379 KX075099:380 KX076753:380 KX076561:380 KX074759:380 MG789064:383 MG789078:383 MG789139:383 MG789163:383 MG789283:383 MG789466:383 MG789552:383 MG789688:383 MG789696:383 MG789774:383 MG789861:383 MG789864:383 MG789923:383 MG789945:383 MG789973:383 MG790036:383 MG790140:383 MG790196:383 MG790292:383 MG790302:383 MG790372:383 MG790413:383 MG790678:383 MG790797:383 MG790812:383 MG790834:383 MG790920:383 MG791123:383 MG791137:383 MG791142:383 MG791223:383 MG791224:383 MG791226:383 MG791239:383 MG791255:383 MG791315:383 MG791338:383 MG791353:383 MG791363:383 MG791382:383 MG791388:383 MG791423:383 MG791425:383 MG791459:383 MG791474:383 MG791546:383 MG791548:383 MG791554:383 MG791563:383 MG791565:383 MG791581:383 MG791585:383 MG791597:383 MG791618:383 MG791646:383 MG791666:383 MG791681:383 MG791752:383 MG791772:383 KM004140:383 KM004147:383 KM004157:383 KM004175:383 KM004186:383 KM004196:383 KM004197:383 KM004665:383 KM004695:383 KM004698:383 KM004716:383 KM004746:383 MG789174:383 MG789183:383 MG789213:383 MG789364:383 MG789403:383 MG789593:383 MG789758:383 MG789933:383 MG790059:383 MG790120:383 MG790341:383 MG790405:383 MG790436:383 MG790634:383 MG790658:383 MG790710:383 MG790730:383 MG790799:383 MG790954:383 MG791298:383 KM004102:383 KM004209:383 KM004243:383 KM004267:383 KM004552:383 KM004553:383 KM004594:383 KM004615:383 KM004617:383 KM004626:383 KM004644:383 KM004651:383 KM004662:383 KM004710:383 KM004717:383 KM004725:383 KM004751:383 KM004753:383 MG791128:385 MG791321:385 MG791342:385 MG791344:385 MG791466:385 MG791469:385 MG791671:385 MG791721:385 MG791763:385 KX075201:387 KX075760:387 KX076556:387 KX076564:387 KX074857:387 KX075583:387 KX075068:387 KX074882:387 KX076313:387 KX077012:387 KX074416:387 KX077090:387 X51796:387 L34723:390 KX074691:391 L34737:393 AF328974:393 AY751866:393 HM236527:396 HM236612:396 AY751906:399 AY751907:399 AY758390:399 HM236773:399 HM236772:399 KX076544:400 DQ081719:400 DQ875559:401 DQ875558:401 DQ875584:401 AY751899:402 HM236534:402 HM236590:402 HM236771:402 HM236813:402 HM236811:402 AY751928:402 KX075650:405 AY751837:405 AY751903:405 HM236617:405 HM236770:405 HM236774:405 HM467868:405 HM467869:405 AY751841:408 HM236742:408 HM467870:408 HM236663:411 DQ875561:411 DQ875583:411 DQ875575:414 U40991:416 DQ875568:417 JF731196:419 KX076211:421 KX075556:425 JF731203:427 JF731202:429 X86138:430 KX075038:431 JF731191:432 JF731192:432 JF731195:432 JF731198:432 JF731199:432 JF731200:432 JF731190:432 JF731193:432 JF731194:432 JF731201:432 JF731204:432 JF731211:432 JF731212:432 AB011248:438 AY006134:438 AF043799:438 AF043991:438 AY006132:438 AY006133:438 AY006320:438 AY006144:438 AY006136:438 AY006157:438 AY751323:438 AF043989:438 AY006259:438 AY006262:438 AY006105:438 AY006111:438 AY006142:438 AY006152:438 AY006153:438 AY006154:438 AY006264:438 AF043835:438 AY006106:438 AY006145:438 AY006146:438 AY006147:438 AY006148:438 AY006158:438 AY006263:438 AF043801:438 AB011247:438 AY006258:438 AY006151:438 AF043993:438 AY006143:438 AY006155:438 AF043761:438 AF043762:438 AF043763:438 AF043802:438 AF043838:438 AY006260:438 AY006261:438 AY006135:438 AY006137:438 AY006138:438 AY006139:438 AY006140:438 AY006149:438 AY006156:438 X86136:439 JF731225:441 AF157103:451 AF078985:453 AF078994:453 AF078995:453 AF078979:453 AF078996:453 AF078966:453 AF078988:453 AF079045:456 AF079034:456 AF079053:456 AM041190:456 AM041209:456 AF079048:456 AF079049:456 AF079000:462 S81469:468 Z69529:468 Z69557:468 D50768:468" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.