rfhg_106921.1

Basic information about the TSS

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TSS ID: rfhg_106921.1 TSS ID(Version3): hg_88991.1 Species: human Chr: chr8		Start: 58553179 End: 58553267 Strand: +
Source datasets	FANTOM5|EPD|DRA000914|ENCODE|PRJDB5282|PRJNA401781 |PRJNA548673|PRJNA615891|PRJNA4843412|DRA013844|PRJNA597322
Protocol	CAGE|TSS_database|C1CAGE|ReCappable-seq|SLIC_CAGE|RAMPAGE |NETCAGE|STRIPE-seq|oligo_capping|TIF-seq2
TSS cluster detected*	15

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D4096465,EH38E2633522)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000447182.6:0 ENST00000413219.6:0 ENST00000424270.6:0 ENST00000523483.5:0 ENST00000520168.5:0 ENST00000519115.5:0 ENST00000260130.9:0 ENST00000522843.5:0 BC143915:0 BC113674:0 BC113676:0 BC143916:0 AK300647:0 AF006636:0 AK295198:0 AK128645:0 AK312274:0 AK298697:0 GeneID: 6386 HGNC/MGI_ID: HGNC:10662 UniProt_ID: A0A024R7Z5 B4DHN5 B4DQ93 G5EA09 O00560 Nearer transcript ids and distances: AF000652:-3 BC013254:15 ENST00000522243.5:-255 view more...

Gene_name: syndecan binding protein Gene_symbol: SDCBP Gene_synonyms: MDA-9 SYCL Gene_source: HGNC:10662

TATA-Box annotation

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Distance to TSS:	-38
Nearest PromoterID:	NM_005625
Entrez ID:	6386
Nearest Unigene:	Hs.200804
Nearest Refseq:	NM_005625
Nearest Ensembl:	ENSG00000137575
Gene Name:	syndecan binding protein
Gene Alias:	MDA-9|MDA9|ST1|SYCL|TACIP18
Gene Type:	protein-coding
CpG%:	0.125000
GC%:	0.730337
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.