rfhg_110780.1
Basic information about the TSS
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| Source datasets | PRJNA615891 | |||||||||||||
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| Protocol | TIF-seq2 | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4147061,EH38E2665774) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 187 |
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| Nearest PromoterID: | NR_108049 |
| Entrez ID: | 100507056 |
| Nearest Unigene: | Hs.343864 |
| Nearest Refseq: | NR_108049 |
| Nearest Ensembl: | |
| Gene Name: | colon cancer associated transcript 1 |
| Gene Alias: | CARLO5|CARLo-5|onco-lncRNA-40 |
| Gene Type: | ncRNA |
| CpG%: | 0.038462 |
| GC%: | 0.471698 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENST00000641174.1:-11 ENST00000641414.2:-16 ENST00000641309.2:-20 ENST00000641867.1:-39 ENST00000642010.1:60 ENST00000641733.1:64 ENST00000641029.1:86 ENST00000641991.1:87 ENST00000641001.1:87 ENST00000641674.2:87 ENST00000641547.1:87 ENST00000641934.1:87 ENST00000641880.1:87 ENST00000641704.2:87 ENST00000641523.2:87 ENST00000641912.1:88 ENST00000641171.1:88 ENST00000641106.2:88 ENST00000641642.1:-113 ENST00000641362.1:119 ENST00000641298.1:120 ENST00000641365.1:124 ENST00000642077.1:124 JX003870:125 ENST00000641187.1:-126 ENST00000641496.1:-130 ENST00000663628.1:-130 ENST00000500112.2:-131 ENST00000641179.1:146 ENST00000641719.1:-153 NR_108049.1:-161 ENST00000641153.2:167 ENST00000641681.1:181 ENST00000642134.1:185 HM358356:189 ENST00000642018.2:203 ENST00000641828.1:213 ENST00000642142.1:-288" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.