rfhg_117031.1

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Basic information about the TSS


TSS ID:rfhg_117031.1
Species:human
Chr:chr9
Start:95507419
End:95507441
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D4214560,EH38E2709772)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_001083606.3:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000429896.6:2
  • U43148:2
  • ENST00000551845.5:153
  • ENST00000553011.5:220
  • NM_001083607.3:220
  • AB189440:220
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-3
Nearest PromoterID:NM_001083606
Entrez ID:5727
Nearest Unigene:Hs.494538
Nearest Refseq:NM_000264
Nearest Ensembl:ENSG00000185920
Gene Name:
Gene Alias:BCNS|NBCCS|PTC|PTC1|PTCH
Gene Type:protein-coding
CpG%:0.045455
GC%:0.478261
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):