rfhg_11807.1

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Basic information about the TSS


TSS ID:rfhg_11807.1
TSS ID(Version3):hg_14197.1
Species:human
Chr:chr1
Start:146052176
End:146052245
Strand:-
Source datasetsFANTOM5|PRJNA548673|PRJNA615891|PRJDB5282|PRJNA4843412
|DRA013844
ProtocolCAGE|TIF-seq2|ReCappable-seq|SLIC_CAGE|C1CAGE|NETCAGE
TSS cluster detected*8

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2219454,EH38E1382384)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000364688.1:0
GeneID:101954276
HGNC/MGI_ID:HGNC:48314
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:RNA, variant U1 small nuclear 6
    Gene_symbol:RNVU1-6
    Gene_synonyms:RNU1-99 vU1.6
    Gene_source:HGNC:48314



    TATA-Box annotation


    Distance to TSS:34
    Nearest PromoterID:NR_104085
    Entrez ID:101954276
    Nearest Unigene:
    Nearest Refseq:NR_104085
    Nearest Ensembl:ENSG00000201558
    Gene Name:RNA, variant U1 small nuclear 6
    Gene Alias:RNU1-99|vU1.6
    Gene Type:snRNA
    CpG%:0.028986
    GC%:0.500000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.