rfhg_11821.1

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Basic information about the TSS


TSS ID:rfhg_11821.1
TSS ID(Version3):hg_223811.1
Species:human
Chr:chr1
Start:146387439
End:146387534
Strand:+
Source datasetsFANTOM5|PRJNA4843412|PRJNA615891|DRA013844|PRJNA401781
|PRJNA548673
ProtocolCAGE|NETCAGE|SLIC_CAGE|RAMPAGE|ReCappable-seq|oligo_capping
|TIF-seq2
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS,CTCF-bound (EH38D2219472,EH38E1382394)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:MN308789:-227
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000660431.1:-237
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:10679
Nearest PromoterID:NR_004427
Entrez ID:26870
Nearest Unigene:
Nearest Refseq:NR_004427
Nearest Ensembl:ENSG00000207005
Gene Name:
Gene Alias:RNU1C1|RNU1C2|U1C1|U1C21
Gene Type:snRNA
CpG%:0.010526
GC%:0.375000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):47(CCTTTTAAACCC,+,0.00)