rfhg_12119.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfhg_12119.1
Species:human
Chr:chr1
Start:150067603
End:150067627
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2220897,EH38E1383328)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000643984.2:-38
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000642888.2:-65
  • ENST00000648868.1:-74
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-161
Nearest PromoterID:NM_007259
Entrez ID:11311
Nearest Unigene:Hs.443750
Nearest Refseq:NM_007259
Nearest Ensembl:ENSG00000136631
Gene Name:
Gene Alias:H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A
Gene Type:protein-coding
CpG%:0.083333
GC%:0.640000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):