rfhg_141139.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfhg_141139.1
TSS ID(Version3):hg_115899.1
Species:human
Chr:chr11
Start:75399490
End:75399572
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|DRA000914|ENCODE|RAMPAGE|PRJNA401781
|PRJNA615891|PRJNA548673|PRJNA597322|PRJNA4843412|DRA013844
|PRJDB5282
ProtocolCAGE|TSS_database|TSS-seq|RAMPAGE|SLIC_CAGE|ReCappable-seq
|oligo_capping|STRIPE-seq|TIF-seq2|NETCAGE|C1CAGE
TSS cluster detected*17

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2470264,EH38E1553083)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000529173.5:0
ENST00000528439.5:0
ENST00000531188.6:0
ENST00000530164.5:0
ENST00000530721.5:0
ENST00000422465.6:0
ENST00000278572.10:0
ENST00000532872.5:0
ENST00000534440.5:0
ENST00000527446.5:0
ENST00000526608.5:0
ENST00000527273.5:0
ENST00000524851.5:0
ENST00000526248.5:0
D28344:0
AK130960:0
BC034149:0
AK129794:0
AK313051:0
BC013231:0
BC100284:0
X55715:0
BC071917:0
BC071669:0
BC003137:0
AK223048:0
S42658:0
CU678394:0
AB464166:0
DQ896136:0
DQ892888:0
U14990:0
U14991:0
U14992:0
BC013196:0
BC003577:0
AB062288:0
GeneID:6188
HGNC/MGI_ID:HGNC:10420
UniProt_ID:E9PJH4 E9PK82 E9PL09 E9PPU1 E9PQ96 E9PQX2 E9PSF4 F2Z2S8 H0YCJ7 P23396 Q53G83
Nearer transcript ids and distances:
  • ENST00000529285.5:98
  • ENST00000534555.5:127
view more...
Gene_name:ribosomal protein S3
Gene_symbol:RPS3
Gene_synonyms:FLJ26283 FLJ27450 MGC87870 S3
Gene_source:HGNC:10420



TATA-Box annotation


Distance to TSS:13
Nearest PromoterID:NM_001256802
Entrez ID:6188
Nearest Unigene:Hs.546286
Nearest Refseq:NM_001005
Nearest Ensembl:ENSG00000149273
Gene Name:ribosomal protein S3
Gene Alias:S3
Gene Type:protein-coding
CpG%:0.085366
GC%:0.554217
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.