rfhg_146028.1

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Basic information about the TSS


TSS ID:rfhg_146028.1
TSS ID(Version3):hg_123570.1
Species:human
Chr:chr12
Start:4538830
End:4538935
Strand:+
Source datasetsFANTOM5|EPD|DBTSS|DRA000914|PRJNA401781|PRJNA548673
|PRJNA597322|PRJDB5282|PRJNA4843412|DRA013844|PRJNA615891
ProtocolCAGE|TSS_database|TSS-seq|RAMPAGE|oligo_capping|STRIPE-seq
|C1CAGE|NETCAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2
TSS cluster detected*15

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2523975,EH38E1588725)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000536886.5:0
ENST00000544110.5:0
ENST00000398012.7:0
ENST00000535558.5:0
ENST00000442992.6:0
ENST00000228843.13:0
ENST00000352618.9:0
ENST00000538817.5:0
ENST00000544927.5:0
AK316367:0
AF006259:0
AK300773:0
AK290428:0
AK291948:0
BC006992:0
BC005973:0
BC016330:0
AK096930:0
AL832243:0
GeneID:10635
HGNC/MGI_ID:HGNC:16956
UniProt_ID:A8K313 F5H031 F5H1Y0 F5H4V6 F5H710 Q96B01
Nearer transcript ids and distances:
  • CU677609:4
  • HQ447239:4
  • JF432673:4
  • KJ893096:4
  • KJ893097:4
  • LF365985:8
  • MA601562:8
  • ENST00000536346.5:-32
view more...
Gene_name:RAD51 associated protein 1
Gene_symbol:RAD51AP1
Gene_synonyms:PIR51
Gene_source:HGNC:16956



TATA-Box annotation


Distance to TSS:-8
Nearest PromoterID:NM_006479
Entrez ID:10635
Nearest Unigene:Hs.730696
Nearest Refseq:NM_006479
Nearest Ensembl:ENSG00000111247
Gene Name:RAD51 associated protein 1
Gene Alias:PIR51
Gene Type:protein-coding
CpG%:0.047619
GC%:0.518868
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.