rfhg_163198.1
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2697169,EH38E1700739) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001353648 |
| Entrez ID: | 65110 |
| Nearest Unigene: | Hs.533855 |
| Nearest Refseq: | NM_023011 |
| Nearest Ensembl: | ENSG00000169062 |
| Gene Name: | |
| Gene Alias: | HUPF3A|RENT3A|UPF3 |
| Gene Type: | protein-coding |
| CpG%: | 0.150000 |
| GC%: | 0.857143 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000493727.5:-450 ENST00000474056.5:-478 NM_001353649.1:-492 NM_001353646.1:-492 NM_001353647.1:-492 NM_001353650.1:-492 NM_001353645.1:-492 NR_148493.1:-492 NR_148490.1:-492 NR_148495.1:-492 NR_148488.1:-492 NR_148494.1:-492 NR_148496.1:-492 NR_148486.1:-492 NR_148489.1:-492 NR_148491.1:-492 NR_148492.1:-492 NR_148487.1:-492" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.