rfhg_163607.1

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Basic information about the TSS

TSS ID:rfhg_163607.1
Species:human
Chr:chr14
Start:21723694
End:21723717
Strand:+
Source datasetsFANTOM5|DRA000914
ProtocolCAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2698643,EH38E1701773)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000390425.2:0
BC035680:0
GeneID:28738
HGNC/MGI_ID:HGNC:12045 HGNC:12128
UniProt_ID:A0A0B4J244
Nearer transcript ids and distances:
  • AB749830:-7
  • AB305688:-8
  • AB977196:-15
  • AB977018:-32
  • AB977364:-32
  • AB749828:34
  • AB976739:-38
  • AB977087:-41
  • AB977411:-43
  • AB976936:-44
  • AB976835:-44
  • AB306070:44
  • AB977349:126
  • AB977205:143
  • AB306124:153
  • AB977493:157
  • AB977483:169
  • AB977321:169
  • AB977491:169
  • KJ902486:171
  • M27377:172
  • X57534:172
  • AB305651:172
  • AJ004871:172
  • EU427374:172
  • JQ778265:172
  • AB306129:190
  • AB305778:192
  • M17651:308
  • AB305687:308
  • AB977007:313
  • AB977071:313
  • AB305762:323
  • AB305702:337
  • KX075586:384
  • KX076681:384
  • KX074535:384
  • KX076912:384
  • KX076914:384
  • KX077120:384
  • KX076813:384
  • KX076452:384
  • KX074317:384
  • KX075852:384
  • KX074352:384
  • AF327297:385
  • KX076680:386
  • KX076822:386
  • KX075848:386
  • KX076685:386
  • KX076967:386
  • KX074270:387
  • KX076670:396
  • AB976848:396
  • KX075334:403
  • S61989:419
  • AB977176:421
  • AB977426:422
  • KX074998:422
  • KX074499:423
  • KX075468:437
  • L34716:439
  • KX075606:439
  • U39096:475
  • AB977187:489
  • AB976840:490
  • AB976721:491
  • AB976751:491
  • AB976798:491
  • AB976726:491
  • AB976819:491
view more...
Gene_name:T cell receptor alpha joining 17; T cell receptor alpha variable 3
Gene_symbol:TRAJ17 TRAV3
Gene_synonyms:
Gene_source:HGNC:12045 HGNC:12128



TATA-Box annotation

Distance to TSS:-52688
Nearest PromoterID:NM_001317107
Entrez ID:26687
Nearest Unigene:
Nearest Refseq:NM_001317107
Nearest Ensembl:ENSG00000276240
Gene Name:T cell receptor alpha joining 17; T cell receptor alpha variable 3
Gene Alias:OR4E1P
Gene Type:protein-coding
CpG%:0.043478
GC%:0.541667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "AB749830:-7 AB305688:-8 AB977196:-15 AB977018:-32 AB977364:-32 AB749828:34 AB976739:-38 AB977087:-41 AB977411:-43 AB976936:-44 AB976835:-44 AB306070:44 AB977349:126 AB977205:143 AB306124:153 AB977493:157 AB977483:169 AB977321:169 AB977491:169 KJ902486:171 M27377:172 X57534:172 AB305651:172 AJ004871:172 EU427374:172 JQ778265:172 AB306129:190 AB305778:192 M17651:308 AB305687:308 AB977007:313 AB977071:313 AB305762:323 AB305702:337 KX075586:384 KX076681:384 KX074535:384 KX076912:384 KX076914:384 KX077120:384 KX076813:384 KX076452:384 KX074317:384 KX075852:384 KX074352:384 AF327297:385 KX076680:386 KX076822:386 KX075848:386 KX076685:386 KX076967:386 KX074270:387 KX076670:396 AB976848:396 KX075334:403 S61989:419 AB977176:421 AB977426:422 KX074998:422 KX074499:423 KX075468:437 L34716:439 KX075606:439 U39096:475 AB977187:489 AB976840:490 AB976721:491 AB976751:491 AB976798:491 AB976726:491 AB976819:491" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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