Basic information about the TSS
| TSS ID: | rfhg_164825.1 |
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| TSS ID(Version3): | hg_139097.1
|
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| Species: | human |
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| Chr: | chr14 |
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| Start: | 30622291 |
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| End: | 30622434 |
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| Strand: | + |
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| Source datasets | FANTOM5|EPD|DRA000914|ENCODE|PRJNA401781|PRJNA548673
|PRJNA615891|PRJNA4843412|DRA013844|PRJDB5282|PRJNA597322 |
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| Protocol | CAGE|TSS_database|oligo_capping|ReCappable-seq|RAMPAGE
|TIF-seq2|NETCAGE|C1CAGE|SLIC_CAGE|STRIPE-seq |
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| TSS cluster detected* | 15 |
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* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2704858,EH38E1705839) |
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| Category: | PLS |
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* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
| Nearest transcript id and distance: | ENST00000678760.1:0
ENST00000677690.1:0
ENST00000678006.1:0
ENST00000677027.1:0
ENST00000678185.1:0
ENST00000678399.1:0
ENST00000676658.1:0
ENST00000679165.1:0
ENST00000679096.1:0
ENST00000679102.1:0
ENST00000678475.1:0
ENST00000676509.1:0
ENST00000676750.1:0
ENST00000678802.1:0
ENST00000678516.1:0
ENST00000679153.1:0
ENST00000678716.1:0
ENST00000678402.1:0
ENST00000678124.1:0
ENST00000555259.5:0
ENST00000677413.1:0
ENST00000676914.1:0
ENST00000553693.6:0
ENST00000676834.1:0
ENST00000678858.1:0
ENST00000554437.6:0
ENST00000469043.2:0
ENST00000678637.1:0
ENST00000679342.1:0
ENST00000676954.1:0
ENST00000677456.1:0
ENST00000678735.1:0
ENST00000677617.1:0
ENST00000676465.1:0
ENST00000676812.1:0
ENST00000678669.1:0
ENST00000676520.1:0
ENST00000676876.1:0
ENST00000677176.1:0
ENST00000557076.6:0
ENST00000677637.1:0
ENST00000463622.6:0
ENST00000544052.6:0
ENST00000556768.5:0
ENST00000484733.6:0
ENST00000458591.7:0
ENST00000677974.1:0
ENST00000677445.1:0
ENST00000557713.5:0
ENST00000677340.1:0
ENST00000676674.1:0
ENST00000311943.11:0
ENST00000679075.1:0
ENST00000678396.1:0
ENST00000676473.1:0
ENST00000396629.6:0
ENST00000678579.1:0
AK308587:0
AF319958:0
AK301406:0
AK297873:0
AK307960:0
AB020724:0
AK290410:0
AK316212:0
AK299222:0
AK298622:0
AK222820:0
AB463243:0
BC017734:0
CU676040:0
AF092139:0
AF086916:0
AF110646:0 |
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| GeneID: | 23256 |
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| HGNC/MGI_ID: | HGNC:20726 |
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| UniProt_ID: | B7Z5N7 B7Z738 G3V2M8 G3V363 G3V3K9 G3V4I1 G3V551 G3V5E2 G3V5F3 H0YIZ7 H0YJY1 J3KNG4 Q53GW1 Q8WVM8 |
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| Nearer transcript ids and distances: | - NM_182835.2:-37
- NM_001283032.1:-37
- NM_001283033.1:-37
- NM_001283031.1:-37
view more... |
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| Gene_name: | sec1 family domain containing 1 |
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| Gene_symbol: | SCFD1 |
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| Gene_synonyms: | KIAA0917 RA410 SLY1 STXBP1L2 |
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| Gene_source: | HGNC:20726 |
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TATA-Box annotation
| Distance to TSS: | 43 |
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| Nearest PromoterID: | NM_016106 |
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| Entrez ID: | 23256 |
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| Nearest Unigene: | Hs.369168 |
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| Nearest Refseq: | NM_016106 |
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| Nearest Ensembl: | ENSG00000092108 |
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| Gene Name: | sec1 family domain containing 1 |
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| Gene Alias: | C14orf163|RA410|SLY1|SLY1P|STXBP1L2 |
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| Gene Type: | protein-coding |
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| CpG%: | 0.076923 |
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| GC%: | 0.638889 |
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| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | |
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TSS expression
Expression data not found.