rfhg_175414.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfhg_175414.1
TSS ID(Version3):hg_147224.1
Species:human
Chr:chr15
Start:65296048
End:65296130
Strand:+
Source datasetsFANTOM5|DBTSS|DRA000914|ENCODE|PRJNA401781|PRJNA4843412
|DRA013844|PRJNA548673|PRJNA615891
ProtocolCAGE|TSS-seq|oligo_capping|NETCAGE|ReCappable-seq|SLIC_CAGE
|TIF-seq2
TSS cluster detected*12

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2800348,EH38E1770594)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000362698.1:0
X04215:0
K03167:0
GeneID:26831
HGNC/MGI_ID:HGNC:10211
UniProt_ID:
Nearer transcript ids and distances:
  • M11772:3
Gene_name:RNA, U5A small nuclear 1
Gene_symbol:RNU5A-1
Gene_synonyms:U5A U5B1
Gene_source:HGNC:10211



TATA-Box annotation


Distance to TSS:38
Nearest PromoterID:NR_002756
Entrez ID:26831
Nearest Unigene:
Nearest Refseq:NR_002756
Nearest Ensembl:ENSG00000199568
Gene Name:RNA, U5A small nuclear 1
Gene Alias:RNU5|RNU5A|RNU5C|U5A|U5B1
Gene Type:snRNA
CpG%:0.036585
GC%:0.409639
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.