rfhg_210678.1

From referenceTSS
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfhg_210678.1
Species:human
Chr:chr19
Start:34428353
End:34428427
Strand:+
Source datasetsPRJNA4843412|DRA013844|PRJNA548673|PRJNA615891|PRJNA401781
ProtocolNETCAGE|CAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2|oligo_capping
TSS cluster detected*8

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3057291,EH38E1950321)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000586313.1:0
ENST00000590048.6:0
ENST00000246548.9:0
AK299514:0
AK023120:0
BC003153:0
AK315521:0
AF079566:0
AF090384:0
U35832:0
AL136905:0
GeneID:10054
HGNC/MGI_ID:HGNC:30661
UniProt_ID:B2RDF5 B3KMZ6 B7Z5X0 K7EPL2 K7ES38 Q9UBT2
Nearer transcript ids and distances:
  • ENST00000607361.5:-1
  • DQ893423:4
  • EU176757:4
  • CU678406:5
  • KJ898145:5
  • BT009781:6
  • CR456756:6
  • AF110957:6
  • MG883744:6
  • ENST00000592841.5:57
  • ENST00000439527.6:449
  • AK124730:449
view more...
Gene_name:ubiquitin like modifier activating enzyme 2
Gene_symbol:UBA2
Gene_synonyms:FLJ13058 HRIHFB2115
Gene_source:HGNC:30661



TATA-Box annotation


Distance to TSS:9
Nearest PromoterID:NM_005499
Entrez ID:10054
Nearest Unigene:Hs.631580
Nearest Refseq:NM_005499
Nearest Ensembl:ENSG00000126261
Gene Name:ubiquitin like modifier activating enzyme 2
Gene Alias:ARX|HRIHFB2115|SAE2
Gene Type:protein-coding
CpG%:0.162162
GC%:0.786667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.