rfhg_23704.1
Basic information about the TSS
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| Source datasets | PRJNA4843412 | |||||||||||||
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| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3095857,EH38E1978377) |
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| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -48 |
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| Nearest PromoterID: | NM_002997 |
| Entrez ID: | 6382 |
| Nearest Unigene: | Hs.224607 |
| Nearest Refseq: | NM_002997 |
| Nearest Ensembl: | ENSG00000115884 |
| Gene Name: | |
| Gene Alias: | CD138|SDC|SYND1|syndecan |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000254351.9:47 NM_002997.5:47 AK311409:47 AJ551176:65 BC008765:67 ENST00000403076.5:81 AK222739:81 ENST00000447124.1:83 AK313974:83 J05392:104 AK299385:110 ENST00000381150.5:-254 NM_001006946.2:-296 KJ897530:309 DQ893265:309 DQ896595:309 AB464260:309 CU679093:309 X60306:310 LF328784:432 MA564361:432" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.