rfhg_238816.1

Basic information about the TSS

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TSS ID: rfhg_238816.1 TSS ID(Version3): hg_200354.1 hg_200355.1 Species: human Chr: chrX		Start: 120469167 End: 120469368 Strand: -
Source datasets	FANTOM5|PRJDB5282|PRJNA401781|PRJNA548673|PRJNA615891 |DRA013844|PRJNA4843412|PRJNA597322
Protocol	CAGE|C1CAGE|RAMPAGE|ReCappable-seq|SLIC_CAGE|NETCAGE |STRIPE-seq|oligo_capping|TIF-seq2
TSS cluster detected*	12

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D4307265,EH38E2766570)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000200639.9:0 ENST00000434600.6:0 ENST00000371335.4:0 AK295038:0 AY561849:0 AB528277:0 X77196:0 AK291090:0 J04183:0 S79873:0 U36336:0 BC002965:0 AK293931:0 KR709861:0 KR709862:0 DQ892095:0 DQ895288:0 CU678318:0 GeneID: 3920 HGNC/MGI_ID: HGNC:6501 UniProt_ID: B4DF49 B7Z2R9 P13473 Nearer transcript ids and distances: AK304405:175 LF379902:272 MA615479:272 LF379901:453 MA615478:453 view more...

Gene_name: lysosomal associated membrane protein 2 Gene_symbol: LAMP2 Gene_synonyms: CD107b Gene_source: HGNC:6501

TATA-Box annotation

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Distance to TSS:	82
Nearest PromoterID:	NM_013995
Entrez ID:	3920
Nearest Unigene:	Hs.496684
Nearest Refseq:	NM_002294
Nearest Ensembl:	ENSG00000005893
Gene Name:	lysosomal associated membrane protein 2
Gene Alias:	CD107b|LAMP-2|LAMPB|LGP-96|LGP110
Gene Type:	protein-coding
CpG%:	0.079602
GC%:	0.613861
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.