rfhg_3659.1

Basic information about the TSS

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TSS ID: rfhg_3659.1 TSS ID(Version3): hg_11121.1 hg_11120.1 hg_11122.1 Species: human Chr: chr1		Start: 25906399 End: 25906492 Strand: -
Source datasets	FANTOM5|PRJNA615891|PRJNA4843412|DRA013844|PRJNA401781 |PRJNA548673|PRJNA597322|PRJDB5282
Protocol	CAGE|SLIC_CAGE|NETCAGE|RAMPAGE|oligo_capping|ReCappable-seq |TIF-seq2|STRIPE-seq|C1CAGE
TSS cluster detected*	12

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D2141346,EH38E1330009)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000426559.6:0 ENST00000455785.7:0 ENST00000465604.1:0 ENST00000580971.1:0 AK303692:0 J04991:0 X53305:0 Z11566:0 AK054594:0 AB209282:0 BX647885:0 BC014353:0 BC082228:0 AK311801:0 D28428:0 GeneID: 100500808 3925 HGNC/MGI_ID: HGNC:38911 HGNC:6510 UniProt_ID: A0A140VJW2 P16949 Q59G27 Q96CE4 Nearer transcript ids and distances: HM005502:-10 ENST00000399728.5:246 NM_203401.2:354 NM_203399.2:-388 ENST00000357865.6:-499 view more...

Gene_name: microRNA 3917; stathmin 1 Gene_symbol: MIR3917 STMN1 Gene_synonyms: FLJ32206 Lag OP18 PP17 PP19 PR22 SMN hsa-mir-3917 Gene_source: HGNC:38911 HGNC:6510

TATA-Box annotation

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Distance to TSS:	9
Nearest PromoterID:	NR_037481
Entrez ID:	100500808
Nearest Unigene:
Nearest Refseq:	NR_037481
Nearest Ensembl:	ENSG00000283938
Gene Name:	microRNA 3917; stathmin 1
Gene Alias:	mir-3917
Gene Type:	ncRNA
CpG%:	0.118280
GC%:	0.670213
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.