rfhg_4224.1

Basic information about the TSS

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TSS ID: rfhg_4224.1 Species: human Chr: chr1		Start: 28328995 End: 28329118 Strand: +
Source datasets	PRJNA548673|PRJNA401781|PRJNA4843412|DRA013844|PRJNA615891 |PRJDB5282
Protocol	CAGE|ReCappable-seq|oligo_capping|NETCAGE|TIF-seq2|RAMPAGE |SLIC_CAGE|C1CAGE
TSS cluster detected*	10

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D2143946,EH38E1332216)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000479574.5:0 ENST00000373842.9:0 ENST00000398997.2:0 ENST00000475655.1:0 AK296130:0 AK000052:0 AB107222:0 BC002694:0 GeneID: 54797 HGNC/MGI_ID: HGNC:25944 UniProt_ID: B4DJL3 Q9BUE0 Nearer transcript ids and distances: LF356902:20 MA592479:20 view more...

Gene_name: mediator complex subunit 18 Gene_symbol: MED18 Gene_synonyms: FLJ20045 SRB5 p28b Gene_source: HGNC:25944

TATA-Box annotation

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Distance to TSS:	16
Nearest PromoterID:	NM_017638
Entrez ID:	54797
Nearest Unigene:	Hs.479911
Nearest Refseq:	NM_017638
Nearest Ensembl:	ENSG00000130772
Gene Name:	mediator complex subunit 18
Gene Alias:	SRB5|p28b
Gene Type:	protein-coding
CpG%:	0.081301
GC%:	0.588710
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.